Commits for braney

v486_preview to v486_preview2 (2025-07-28 to 2025-08-04) v486

fcc66292648958c70053054587910f187ba249d0 Mon Jul 28 15:42:35 2025 -0700

• make setColorWith work a big less weirdly by using an invisible color for the graph when there is nothing in the bigBed.
  • src/hg/hgTracks/wigTrack.c - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/gnomad.ra - lines changed 2, context: html, text, full: html, text

ab07ef01b54a3f22034d58444204e02d57eb6c47 Mon Jul 28 16:01:04 2025 -0700

• comment out the setColorWidth to avoid it sneaking out to the RR
  • src/hg/makeDb/trackDb/human/hg38/gnomad.ra - lines changed 3, context: html, text, full: html, text

216fa1001e5c2c6dfed06c0ed18592acf4b94c32 Tue Jul 29 10:23:35 2025 -0700

• take out commented out include files
  • src/hg/hgTables/bedMethyl.c - lines changed 20, context: html, text, full: html, text

214fe5d147954cd0d62f127025f7cb3a59f38085 Fri Aug 1 15:26:14 2025 -0700

• support Genark hubs as fromDb in hgConvert
  • src/hg/hgConvert/hgConvert.c - lines changed 6, context: html, text, full: html, text

84688c95e385ee526a59d7dac8f6ff644781361b Sat Aug 2 11:11:57 2025 -0700

• ongoing work on quickLift. Made saved sessions work a little more rationally
  • src/hg/hgConvert/hgConvert.c - lines changed 19, context: html, text, full: html, text
  • src/hg/lib/cart.c - lines changed 2, context: html, text, full: html, text
  • src/hg/lib/hubConnect.c - lines changed 12, context: html, text, full: html, text
  • src/hg/lib/quickLift.c - lines changed 3, context: html, text, full: html, text
  • src/hg/lib/trackHub.c - lines changed 13, context: html, text, full: html, text

509dafad770b5483a9a6efe709c4b83017dd1d29 Sun Aug 3 12:28:59 2025 -0700

• always ask if user wants to lift annotation in hgConvert if the config variable is on
  • src/hg/hgConvert/hgConvert.c - lines changed 2, context: html, text, full: html, text