ea9ca019b202a347d3c3e82e64f7834fac3639a9 gperez2 Thu Jul 31 19:50:23 2025 -0700 Fixing the 'Link to PanelApp Australia' url on hgc page, refs #35758 diff --git src/hg/makeDb/trackDb/human/panelApp.alpha.ra src/hg/makeDb/trackDb/human/panelApp.alpha.ra index 4f775befa3b..b23da885bb3 100644 --- src/hg/makeDb/trackDb/human/panelApp.alpha.ra +++ src/hg/makeDb/trackDb/human/panelApp.alpha.ra @@ -1,120 +1,120 @@ track panelApp shortLabel PanelApp longLabel Genomics England and Australia PanelApp Diagnostics type bigBed 9 + visibility hide group phenDis compositeTrack on noParentConfig on showCfg on track panelAppGenes parent panelApp on shortLabel PanelApp GE Genes longLabel Genomics England PanelApp Genes type bigBed 9 + visibility pack bigDataUrl /gbdb/$D/panelApp/genes.bb itemRgb on url https://panelapp.genomicsengland.co.uk/panels/$<panelID>/gene/$<geneSymbol>/ urlLabel Link to PanelApp urls omimGene="https://www.omim.org/entry/$$" ensemblGenes="https://ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=$$" hgncID="https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:$$" panelID="https://panelapp.genomicsengland.co.uk/panels/$$/" geneSymbol="https://panelapp.genomicsengland.co.uk/panels/entities/$$" mouseOver <b>Gene:</b> $entityName<br><b>Panel:</b> $panelName<br><b>MOI:</b> $modeOfInheritance<br><b>Phenotypes: </b> $phenotypes<br><b>Confidence level:</b> $confidenceLevel labelFields geneSymbol skipEmptyFields on skipFields chrom,chromStart,blockStarts,blockSizes,entityName,tags,status,mouseOverField filterValues.confidenceLevel 3,2,1,0 priority 1 filter.panelVersion 1 filterLabel.panelVersion Minimum panel version to display track panelAppCNVs parent panelApp on shortLabel PanelApp GE CNVs longLabel Genomics England PanelApp CNV Regions type bigBed 9 + visibility pack bigDataUrl /gbdb/$D/panelApp/cnv.bb itemRgb on urls omimGene="https://www.omim.org/entry/$$" panelID="https://panelapp.genomicsengland.co.uk/panels/$$/" entityName="https://panelapp.genomicsengland.co.uk/panels/entities/$$" labelFields entityName skipEmptyFields on mouseOver <b>Gene:</b> $entityName<br><b>Panel:</b> $panelName<br><b>MOI:</b> $modeOfInheritance<br><b>Phenotypes: </b> $phenotypes<br><b>Confidence level:</b> $confidenceLevel skipFields chrom,chromStart,blockStarts,blockSizes filterValues.confidenceLevel 3,2,1,0 priority 2 filter.versionCreated 1 filterLabel.versionCreated Minimum panel version to display track panelAppTandRep parent panelApp on shortLabel PanelApp GE STRs longLabel Genomics England PanelApp Short Tandem Repeats type bigBed 9 + visibility pack bigDataUrl /gbdb/$D/panelApp/tandRep.bb itemRgb on urls omimGene="https://www.omim.org/entry/$$" ensemblID="https://ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=$$" hgncID="https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:$$" panelID="https://panelapp.genomicsengland.co.uk/panels/$$/" geneSymbol="https://panelapp.genomicsengland.co.uk/panels/entities/$$" labelFields hgncSymbol skipEmptyFields on skipFields chrom,chromStart,blockStarts,blockSizes,mouseOverField filterValues.confidenceLevel 3,2,1,0 mouseOver <b>Gene name:</b> $geneName<br><b>Panel:</b> $name<br><b>MOI:</b> $modeOfInheritance<br><b>Phenotypes: </b> $phenotypes<br><b>Confidence level:</b> $confidenceLevel priority 3 filter.version 1 filterLabel.version Minimum panel version to display track panelAppAusGenes parent panelApp on shortLabel PanelApp Australia Genes longLabel PanelApp Australia Genes Panels type bigBed 9 + visibility pack bigDataUrl /gbdb/$D/panelApp/genesAus.bb - url https://panelapp-aus.org//panels/$<panelID>/gene/$<geneSymbol>/ + url https://panelapp-aus.org/panels/$<panelID>/gene/$<geneSymbol>/ urlLabel Link to PanelApp Australia urls omimGene="https://www.omim.org/entry/$$" ensemblGenes="https://ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=$$" hgncID="https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:$$" panelID="https://panelapp-aus.org/panels/$$/" geneSymbol="https://panelapp-aus.org/panels/entities/$$" mouseOver <b>Gene:</b> $entityName<br><b>Panel:</b> $panelName<br><b>MOI:</b> $modeOfInheritance<br><b>Phenotypes: </b> $phenotypes<br><b>Confidence level:</b> $confidenceLevel labelFields geneSymbol skipEmptyFields on skipFields chrom,chromStart,blockStarts,blockSizes,entityName,tags,status,mouseOverField filterValues.confidenceLevel 3,2,1,0 filter.panelVersion 0 filterLabel.panelVersion Minimum panel version to display priority 4 track panelAppAusCNVs parent panelApp on shortLabel PanelApp Australia CNVs longLabel PanelApp Australia CNV Regions type bigBed 9 + visibility pack bigDataUrl /gbdb/$D/panelApp/cnvAus.bb itemRgb on urls omimGene="https://www.omim.org/entry/$$" panelID="https://panelapp-aus.org/panels/$$/" entityName="https://panelapp-aus.org/panels/entities/$$" labelFields entityName skipEmptyFields on skipFields chrom,chromStart,blockStarts,blockSizes mouseOver <b>Gene:</b> $entityName<br><b>Panel:</b> $panelName<br><b>MOI:</b> $modeOfInheritance<br><b>Phenotypes: </b> $phenotypes<br><b>Confidence level:</b> $confidenceLevel filterValues.confidenceLevel 3,2,1,0 filter.versionCreated 0 filterLabel.versionCreated Minimum panel version to display priority 5 track panelAppAusTandRep parent panelApp on shortLabel PanelApp Australia STRs longLabel PanelApp Australia Short Tandem Repeats type bigBed 9 + visibility pack bigDataUrl /gbdb/$D/panelApp/tandRepAus.bb itemRgb on urls omimGene="https://www.omim.org/entry/$$" ensemblID="https://ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=$$" hgncID="https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:$$" panelID="https://panelapp-aus.org/panels/$$/" geneSymbol="https://panelapp-aus.org/panels/entities/$$" mouseOver <b>Gene name:</b> $geneName<br><b>Panel:</b> $name<br><b>MOI:</b> $modeOfInheritance<br><b>Phenotypes: </b> $phenotypes<br><b>Confidence level:</b> $confidenceLevel labelFields hgncSymbol skipEmptyFields on skipFields chrom,chromStart,blockStarts,blockSizes,mouseOverField filterValues.confidenceLevel 3,2,1,0 priority 6 filter.version 0 filterLabel.version Minimum panel version to display