e58683ce4249ec43684a323144f88ca8e56d14a1 hiram Thu Jul 31 17:11:53 2025 -0700 using hgLoadMafSummary.v483 to work around maf dots no redmine diff --git src/hg/utils/automation/doRecipBest.pl src/hg/utils/automation/doRecipBest.pl index d3a36715579..026293cf92d 100755 --- src/hg/utils/automation/doRecipBest.pl +++ src/hg/utils/automation/doRecipBest.pl @@ -271,31 +271,31 @@ cd ../bigMaf ln -s ../mafRBestNet/$tDb.$qDb.rbest.maf.gz ./$tDb.$qDb.rbestNet.maf.gz _EOF_ ); } } if ($tTrackHub) { $bossScript->add(<<_EOF_ cd $buildDir/bigMaf wget --no-check-certificate -O bigMaf.as 'https://raw.githubusercontent.com/ucscGenomeBrowser/kent/refs/heads/master/src/hg/lib/bigMaf.as' wget --no-check-certificate -O mafSummary.as 'https://raw.githubusercontent.com/ucscGenomeBrowser/kent/refs/heads/master/src/hg/lib/mafSummary.as' mafToBigMaf $tDb $tDb.$qDb.rbestNet.maf.gz stdout \\ | sort -k1,1 -k2,2n > $tDb.$qDb.rbestNet.txt bedToBigBed -itemsPerSlot=4 -type=bed3+1 -as=bigMaf.as -tab $tDb.$qDb.rbestNet.txt \\ $targetSizes $tDb.$qDb.rbestNet.bb -hgLoadMafSummary -minSeqSize=1 -test $tDb $tDb.$qDb.rbestNet.summary \\ +hgLoadMafSummary.v483 -minSeqSize=1 -test $tDb $tDb.$qDb.rbestNet.summary \\ $tDb.$qDb.rbestNet.maf.gz cut -f2- $tDb.$qDb.rbestNet.summary.tab | sort -k1,1 -k2,2n \\ > $tDb.$qDb.rbestNet.summary.bed bedToBigBed -type=bed3+4 -as=mafSummary.as -tab \\ $tDb.$qDb.rbestNet.summary.bed \\ $targetSizes $tDb.$qDb.rbestNet.summary.bb rm -f $tDb.$qDb.rbestNet.txt $tDb.$qDb.rbestNet.summary.tab \\ $tDb.$qDb.rbestNet.summary.bed _EOF_ ); } $bossScript->execute(); } # doRecipBest