e69a819c8711dd9fe6f8e475e1591ea41516106f jnavarr5 Fri Aug 1 13:09:47 2025 -0700 Announcing the PubTator track for hg38 and hg19, refs #35957 diff --git src/hg/makeDb/trackDb/human/trackDb.ra src/hg/makeDb/trackDb/human/trackDb.ra index c5033f0d317..38680021fda 100644 --- src/hg/makeDb/trackDb/human/trackDb.ra +++ src/hg/makeDb/trackDb/human/trackDb.ra @@ -216,46 +216,46 @@ dataVersion /gbdb/$D/bbi/varChatVersion.txt html varChat.html track pubtator shortLabel PubTator Variants longLabel dbSNP variants and other genetic variants grounded to dbSNP by tmVar; collected by PubTator3 visibility dense type bigBed 9 + bigDataUrl /gbdb/$D/pubs2/pubtatorDbSnp.bb noScoreFilter on exonNumbers off itemRgb on parent varsInPubs pack urls pubmedIds="https://www.ncbi.nlm.nih.gov/pubmed/$$" mouseOver $name found in ${numPubmedIds} PubMed articles + pennantIcon New red ../goldenPath/newsarch.html#080125 "Released Aug. 01, 2025" html varsInPubs track varaico shortLabel Varaico Variants longLabel Varaico Variants extracted from full text publications, titles, and abstracts visibility dense type bigBed 9 + bigDataUrl /gbdb/$D/bbi/varaico.bb noScoreFilter on exonNumbers off # itemRgb on dataVersion release 1 parent varsInPubs pack urls outlink="$$" selectedPmid="https://www.ncbi.nlm.nih.gov/pubmed/$$" rgene="https://www.ncbi.nlm.nih.gov/nuccore/$$" mouseOver <b>$hgncSymbol $variantOrigStrs</b> in: $author ($journal, $year) - $title <br> <b>Number of publications:</b> $pmidCount <br> <b>Variant Effect:</b> $variantEffect - pennantIcon New red ../goldenPath/newsarch.html#052125 "Released May 21, 2025" html varaico.html track caseControl compositeTrack on shortLabel Case Control longLabel Case Control Consortium group phenDis visibility hide type chromGraph minMax 0,15 linesAt 5,10 track cccTrendPvalBd parent caseControl shortLabel CCC Bipolar Dis