34277489b7571b02a541eb567ab88f3383c56ecb jnavarr5 Tue Jul 29 12:29:33 2025 -0700 Fixing a typo in the pipefail line, no Redmine diff --git src/hg/utils/otto/varChat/varChatOtto.sh src/hg/utils/otto/varChat/varChatOtto.sh index 7186990dbce..b8b3092825b 100755 --- src/hg/utils/otto/varChat/varChatOtto.sh +++ src/hg/utils/otto/varChat/varChatOtto.sh @@ -1,18 +1,18 @@ #!/bin/bash -set -e -o pipefile +set -e -o pipefail cd /hive/data/outside/otto/varChat wget -q https://ucsc-engenome-varchat.s3.eu-west-1.amazonaws.com/latest/VarChat_GRCh38_latest.bb -O varChat.hg38.latest.bb wget -q https://ucsc-engenome-varchat.s3.eu-west-1.amazonaws.com/latest/VarChat_GRCh37_latest.bb -O varChat.hg19.latest.bb # Check if the files are the same if cmp -s varChat.hg38.latest.bb varChat.hg38.bb; then # Files are the same, exit silently rm varChat.hg38.latest.bb rm varChat.hg19.latest.bb exit 0 else # Files are different, continue with the script or add actions echo "Updating VarChat track..."