ebccdd48004d96aa3d5dce2d4bd4f493e86b0e4f
lrnassar
Fri Aug 29 19:06:39 2025 -0700
Updating panelApp Aus to include all gene panels but display only the two curated ones by default, refs #36219
diff --git src/hg/makeDb/trackDb/human/panelApp.html src/hg/makeDb/trackDb/human/panelApp.html
index cfc2936b7dd..23ab3ba22e8 100644
--- src/hg/makeDb/trackDb/human/panelApp.html
+++ src/hg/makeDb/trackDb/human/panelApp.html
@@ -55,31 +55,31 @@
Display Conventions
There are a few differences between the Genomics England and the Australian Genomics tracks:
Genomics England
- By default, only items with a version greater than or equal to 1 are displayed. This
can be changed in the track configuration menu.
Australian Genomics
- For the PanelApp Genes track, only items from the Mendeliome and
-Incidentalome panels are included. The sum total of these two panels represents all the
+Incidentalome panels are displayed by default. The sum total of these two panels represents all the
gene-disease relationships available on the platform and provides an overarching assessment of the
association between each gene and disease(s). Pulling information from other panels can be
confusing, as the same gene may have different ratings across different panels.
- By default, all versions are displayed (versions greater than 0). This
can be changed in the track configuration menu.
The individual tracks are colored by confidence level:
- Score 3 (lime green) - High level of evidence
for this gene-disease association. Demonstrates confidence that this gene should be
used for genome interpretation.