e05b985e2e81191b8e46da0afd336382afc66e12
max
  Fri Aug 29 00:58:40 2025 -0700
adding panmask track, refs #36293

diff --git src/hg/makeDb/doc/hg38/problematic.txt src/hg/makeDb/doc/hg38/problematic.txt
index a655cfd802b..55626aefea9 100644
--- src/hg/makeDb/doc/hg38/problematic.txt
+++ src/hg/makeDb/doc/hg38/problematic.txt
@@ -91,36 +91,40 @@
 wget https://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/release/genome-stratifications/v3.3/GRCh38@all/Union/GRCh38_alldifficultregions.bed.gz
 wget https://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/release/genome-stratifications/v3.3/GRCh38@all/Union/GRCh38_alllowmapandsegdupregions.bed.gz
 wget https://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/release/genome-stratifications/v3.3/GRCh38@all/Union/GRCh38_notinalldifficultregions.bed.gz
 wget https://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/release/genome-stratifications/v3.3/GRCh38@all/Union/GRCh38_notinalllowmapandsegdupregions.bed.gz
 #edit trackDb.txt to include the 4 datasets
 #Bed to BigBed conversion because I realized you can't see beds properly on the hub
 bedToBigBed /cluster/home/mchalama/public_html/tracks/difficult/hg38/GRCh38_alldifficultregions.bed.gz /cluster/home/mchalama/public_html/tracks/difficult/hg38.chrom.sizes GRCh38_alldifficultregions.bb
 bedToBigBed /cluster/home/mchalama/public_html/tracks/difficult/hg38/GRCh38_alllowmapandsegdupregions.bed.gz /cluster/home/mchalama/public_html/tracks/difficult/hg38.chrom.sizes GRCh38_alllowmapandsegdupregions.bb
 bedToBigBed /cluster/home/mchalama/public_html/tracks/difficult/hg38/GRCh38_notinalldifficultregions.bed.gz /cluster/home/mchalama/public_html/tracks/difficult/hg38.chrom.sizes GRCh38_notinalldifficultregions.bb
 bedToBigBed /cluster/home/mchalama/public_html/tracks/difficult/hg38/GRCh38_notinalllowmapandsegdupregions.bed.gz /cluster/home/mchalama/public_html/tracks/difficult/hg38.chrom.sizes GRCh38_notinalllowmapandsegdupregions.bb
 edit the html file to include information about the track
 #open genome browser
 #navigate to custom hub and paste the following URL
 #https://hgwdev.gi.ucsc.edu/~mchalama/tracks/difficult/hub.txt
 
-
 # Gerardo workflow for v3.5:
 # Copied the trackDb.txt into the human/hg38/problematic.ra and copied html description into problematic html
 # Downloaded the v3.5 data
 cd /hive/data/genomes/hg38/bed/
 mkdir problematic; cd problematic
 mkdir GIAB; cd GIAB
 wget https://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/release/genome-stratifications/v3.5/GRCh38@all/Union/GRCh38_alldifficultregions.bb
 wget https://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/release/genome-stratifications/v3.5/GRCh38@all/Union/GRCh38_alllowmapandsegdupregions.bb
 wget https://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/release/genome-stratifications/v3.5/GRCh38@all/Union/GRCh38_notinalldifficultregions.bb
 wget https://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/release/genome-stratifications/v3.5/GRCh38@all/Union/GRCh38_notinalllowmapandsegdupregions.bb
 cd /gbdb/hg38/
 mkdir problematic; cd problematic
 mkdir GIAB; cd GIAB
 # Made symlinks
 ln -s /hive/data/genomes/hg38/bed/problematic/GIAB/alldifficultregions.bb
 ln -s /hive/data/genomes/hg38/bed/problematic/GIAB/notinalldifficultregions.bb
 ln -s /hive/data/genomes/hg38/bed/problematic/GIAB/alllowmapandsegdupregions.bb
 ln -s /hive/data/genomes/hg38/bed/problematic/GIAB/notinalllowmapandsegdupregions.bb
 # Updated the bigDataUrl problematic.ra and problematic.html
 #############################################################################
+
+# Panmask track, Max, Aug 29 2025
+wget https://zenodo.org/records/16755940/files/hg38.pm151b-v3.easy.bed.gz?download=1
+mv hg38.pm151b-v3.easy.bed.gz\?download\=1 hg38.pm151b-v3.easy.bed.gz
+bedToBigBed hg38.pm151b-v3.easy.bed.gz ../../../chrom.sizes hg38.pm151b-v3.easy.bb