Commits for braney

v486_base to v487_preview (2025-08-11 to 2025-08-18) v487

325f711f30c884459738f065f3415ce2914ec828 Wed Aug 13 16:18:51 2025 -0700

• get hgConvert and hgLiftOver to use genark assemblies that are not in the UCSC taxId list
  • src/hg/hgConvert/hgConvert.c - lines changed 9, context: html, text, full: html, text
  • src/hg/hgLiftOver/hgLiftOver.c - lines changed 19, context: html, text, full: html, text
  • src/hg/lib/genark.c - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/hdb.c - lines changed 24, context: html, text, full: html, text
  • src/hg/lib/web.c - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/genarkOrg.txt - lines changed 1, context: html, text, full: html, text

abaf0c7fca09364bf38dfbdcf2c49e910b3b01f6 Sat Aug 16 10:56:58 2025 -0700

• ongoing work on quickLift
  • src/hg/lib/hdb.c - lines changed 2, context: html, text, full: html, text
  • src/hg/lib/hubConnect.c - lines changed 20, context: html, text, full: html, text

0fbc4aeaa5dc8cc1be2ddf15500790407ed9df91 Sat Aug 16 11:18:40 2025 -0700

• support bed8 and bed9 in quickLift
  • src/hg/hgTracks/bedTrack.c - lines changed 69, context: html, text, full: html, text

953748cd6cac972d5472b72e07e579dd6abc90dc Sat Aug 16 14:23:50 2025 -0700

• make the indel track for quickLift a little more useful
  • src/hg/hgTracks/quickLift.c - lines changed 67, context: html, text, full: html, text