7910a15d66e4f34c5d155cf73fb3132868b33c37
lrnassar
  Thu Aug 14 14:17:34 2025 -0700
Updating panelApp based on collaborator feedback, refs #36219

diff --git src/hg/utils/otto/panelApp/doPanelApp.py src/hg/utils/otto/panelApp/doPanelApp.py
index d9cc6170a58..fadfdd96535 100755
--- src/hg/utils/otto/panelApp/doPanelApp.py
+++ src/hg/utils/otto/panelApp/doPanelApp.py
@@ -973,31 +973,31 @@
     hg19Bed, hg38Bed = downloadGenes("https://panelapp.genomicsengland.co.uk/api/v1/panels/?format=json")
     writeBb(hg19Bed, hg38Bed, "genes")
     # STRs track
     hg19Bed, hg38Bed = downloadTandReps("https://panelapp.genomicsengland.co.uk/api/v1/strs/?format=json")
     writeBb(hg19Bed, hg38Bed, "tandRep")
     # CNV track
     hg38Bed = downloadCnvs('https://panelapp.genomicsengland.co.uk/api/v1/regions/?format=json')
     # no hg19 CNV data yet from PanelApp - still true as of 5/20/2025
     writeBb(None, hg38Bed, "cnv")
 
     flipFiles('England')
     updateGbdbSymlinks('England')
 
     # Now update panelApp Australia
     # Genes track
-    hg19Bed, hg38Bed = downloadGenes("https://panelapp-aus.org/api/v1/panels/?format=json", onlyPanels=[137, 126])
+    hg19Bed, hg38Bed = downloadGenes("https://panelapp-aus.org/api/v1/panels/?format=json")
     writeBb(hg19Bed, hg38Bed, "genesAus")
     # STRs track
     hg19Bed, hg38Bed = downloadTandReps("https://panelapp-aus.org/api/v1/strs/?format=json")
     writeBb(hg19Bed, hg38Bed, "tandRepAus")
     # CNVs track
     hg38Bed = downloadCnvs('https://panelapp-aus.org/api/v1/regions/?format=json')
     # no hg19 CNV data yet from PanelApp - still true as of 5/20/2025
     writeBb(None, hg38Bed, "cnvAus")
 
     flipFiles('Australia')
     updateGbdbSymlinks('Australia')
 
     print("PanelApp otto update: OK")
 
 main()