Commits for hiram

v488_preview2 to v488_base (2025-09-15 to 2025-09-22) v488

e1874141e3c52a43cbdd32bcceff60f2a4232807 Mon Sep 15 12:57:55 2025 -0700

• fixed rmToTrackHub.pl script from Robert
  • src/hg/utils/automation/asmHubRepeatMasker.sh - lines changed 9, context: html, text, full: html, text

67eb161b05397c50dcfb3c7ec1b60654b15d66d2 Mon Sep 15 13:00:04 2025 -0700

• fixed rmToTrackHub.pl script from Robert
  • src/hg/utils/automation/doRepeatMasker.pl - lines changed 1, context: html, text, full: html, text

d82bb72f23414b783c5f3a7158a36002f27270d8 Mon Sep 15 15:24:56 2025 -0700

• adding quickLift file creation refs #35575
  • src/hg/utils/automation/doBlastzChainNet.pl - lines changed 17, context: html, text, full: html, text

6ddbb235ad633ecb2f7958329710b79fb07ff1c5 Tue Sep 16 11:51:08 2025 -0700

• adding the quickLift symlinks to /gbdb/ when database assembly refs #35575
  • src/hg/utils/automation/doBlastzChainNet.pl - lines changed 6, context: html, text, full: html, text

fb1e22b084def517ed20cc226a7e2e1fd4806abc Fri Sep 19 16:06:08 2025 -0700

• RefSeq update adding a couple of new ones refs #29545
  • src/hg/makeDb/doc/birdsAsmHub/birds.orderList.tsv - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/fishAsmHub/fish.orderList.tsv - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/doc/mammalsAsmHub/mammals.orderList.tsv - lines changed 4, context: html, text, full: html, text

44c4479a850baccdca9e6b239f2899c20d30d941 Fri Sep 19 16:25:14 2025 -0700

• RefSeq update adding a couple of new ones refs #29545
  • src/hg/makeDb/doc/vertebrateAsmHub/vertebrate.orderList.tsv - lines changed 6, context: html, text, full: html, text

5e3d6a4c37c01514443d2bf6c1632b14cbadf7dd Fri Sep 19 16:28:49 2025 -0700

• RefSeq update adding a couple of new ones refs #29545
  • src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv - lines changed 13, context: html, text, full: html, text