1dee540669a2ac51afa2ebdff3b53e7f3abc7cc2 jnavarr5 Fri Sep 19 12:24:43 2025 -0700 Updating the descripiton to match the styling of the other tracks in the composite, refs #35054 diff --git src/hg/makeDb/trackDb/human/decipherContainer.html src/hg/makeDb/trackDb/human/decipherContainer.html index 2e2e381dfee..10a0bbc5ce5 100644 --- src/hg/makeDb/trackDb/human/decipherContainer.html +++ src/hg/makeDb/trackDb/human/decipherContainer.html @@ -113,62 +113,53 @@ about the data:

Position: Specifies the chromosomal range of the CNV.
Type of CNV: Indicates if the variation is a loss, gain, or deletions/duplications(del/dup).
Frequency of CNV: Reflects how often the CNV occurs in the sampled population.
Number of Observations: The count of times this CNV was observed in the dataset.
Sample Size of Study: The total number of samples examined.

-For the DDG2P track, items are colored according confidence of gene disease association is true:

+For the DDG2P track, items are colored according to the likelihood that the gene-disease +association is true:

Definitive
Strong
Moderate
Limited
Refuted
Green - Definitive
Blue - Strong
Orange - Moderate
Red - Limited
Gray - Refuted

Each mouse over item includes the following fields:

G2P ID: Unique identifier assigned by the Gene2Phenotype (G2P) database.
Number of PubMed IDs: Count of publications associated with the variant.
Molecular Mechanism: Description of the molecular processes and interactions causing pathogenic effects.
Allelic Requirements: Number of alleles required at a locus to produce a pathogenic phenotype (e.g., monoallelic, biallelic).
Variant Consequence: Predicted effect each allele of a variant has on a transcript.
Disease Name: Name of the disease associated with the variant.
Date of Last Review: Most recent date the entry was manually reviewed.

Each mouseover tooltip provides the following information:

G2P ID: Unique identifier assigned by the Gene2Phenotype (G2P) database.
Number of PubMed IDs: Count of publications associated with the variant.
Molecular Mechanism: Description of the molecular processes and interactions + causing pathogenic effects.
Allelic Requirements: Number of alleles required at a locus to produce a + pathogenic phenotype (e.g., monoallelic, biallelic).
Variant Consequence: Predicted effect each allele of a variant has on a + transcript.
Disease Name: Name of the disease associated with the variant.
Date of Last Review: Most recent date the entry was manually reviewed.

Method

Data provided by the DECIPHER project group are imported and processed to create a simple BED track to annotate the genomic regions associated with individual patients.

Data provided by the Gene2Phenotype project group were imported and processed to create a BED-based track annotating genomic regions associated with individual patients. Standard genome assembly coordinates and gene annotations were used to map DDG2P entries to the browser.