1dee540669a2ac51afa2ebdff3b53e7f3abc7cc2 jnavarr5 Fri Sep 19 12:24:43 2025 -0700 Updating the descripiton to match the styling of the other tracks in the composite, refs #35054 diff --git src/hg/makeDb/trackDb/human/decipherContainer.html src/hg/makeDb/trackDb/human/decipherContainer.html index 2e2e381dfee..10a0bbc5ce5 100644 --- src/hg/makeDb/trackDb/human/decipherContainer.html +++ src/hg/makeDb/trackDb/human/decipherContainer.html @@ -113,62 +113,53 @@ about the data: </P> <ul> <li><strong>Position:</strong> Specifies the chromosomal range of the CNV.</li> <li><strong>Type of CNV:</strong> Indicates if the variation is a loss, gain, or deletions/duplications(del/dup).</li> <li><strong>Frequency of CNV:</strong> Reflects how often the CNV occurs in the sampled population.</li> <li><strong>Number of Observations:</strong> The count of times this CNV was observed in the dataset.</li> <li><strong>Sample Size of Study:</strong> The total number of samples examined.</li> </ul> <p> -For the <b>DDG2P track</b>, items are colored according confidence of gene disease association is true:</p> +For the <b>DDG2P track</b>, items are colored according to the likelihood that the gene-disease +association is true:</p> <ul> - <li style="color: green;">Definitive</li> - <li style="color: blue;">Strong</li> - <li style="color: orange;">Moderate</li> - <li style="color: red;">Limited</li> - <li style="color: gray;">Refuted</li> + <li> <font style="color: green;"><b>Green</b></font> - Definitive</li> + <li> <font style="color: blue;"><b>Blue</b></font> - Strong</li> + <li> <font style="color: orange;"><b>Orange</b></font> - Moderate</li> + <li> <font style="color: red;"><b>Red</b></font> - Limited</li> + <li> <font style="color: gray;"><b>Gray</b></font> - Refuted</li> </ul> -<p>Each mouse over item includes the following fields:</p> -<dl> - <dt><strong>G2P ID</strong></dt> - <dd>Unique identifier assigned by the Gene2Phenotype (G2P) database.</dd> - - <dt><strong>Number of PubMed IDs</strong></dt> - <dd>Count of publications associated with the variant.</dd> - - <dt><strong>Molecular Mechanism</strong></dt> - <dd>Description of the molecular processes and interactions causing pathogenic effects.</dd> - - <dt><strong>Allelic Requirements</strong></dt> - <dd>Number of alleles required at a locus to produce a pathogenic phenotype (e.g., monoallelic, biallelic).</dd> - - <dt><strong>Variant Consequence</strong></dt> - <dd>Predicted effect each allele of a variant has on a transcript.</dd> - - <dt><strong>Disease Name</strong></dt> - <dd>Name of the disease associated with the variant.</dd> - - <dt><strong>Date of Last Review</strong></dt> - <dd>Most recent date the entry was manually reviewed.</dd> -</dl> +<p>Each <b>mouseover</b> tooltip provides the following information:</p> +<ul> + <li><strong>G2P ID</strong>: Unique identifier assigned by the Gene2Phenotype (G2P) database.</li> + <li><strong>Number of PubMed IDs</strong>: Count of publications associated with the variant.</li> + <li><strong>Molecular Mechanism</strong>: Description of the molecular processes and interactions + causing pathogenic effects.</li> + <li><strong>Allelic Requirements</strong>: Number of alleles required at a locus to produce a + pathogenic phenotype (e.g., monoallelic, biallelic).</li> + <li><strong>Variant Consequence</strong>: Predicted effect each allele of a variant has on a + transcript.</li> + <li><strong>Disease Name</strong>: Name of the disease associated with the variant.</li> + <li><strong>Date of Last Review</strong>: Most recent date the entry was manually reviewed.</li> +</ul> <H2>Method</H2> <P> Data provided by the DECIPHER project group are imported and processed to create a simple BED track to annotate the genomic regions associated with individual patients. </p> <p> Data provided by the Gene2Phenotype project group were imported and processed to create a BED-based track annotating genomic regions associated with individual patients. Standard genome assembly coordinates and gene annotations were used to map DDG2P entries to the browser. </P>