8aae31876e1061cfdae882f5d5e4f7ae9b5534df
jnavarr5
Fri Sep 19 11:19:50 2025 -0700
Staging the DDG2P track for release, refs #35054
diff --git src/hg/makeDb/trackDb/human/decipher.ra src/hg/makeDb/trackDb/human/decipher.ra
index d75726dadc1..e0d0484b222 100644
--- src/hg/makeDb/trackDb/human/decipher.ra
+++ src/hg/makeDb/trackDb/human/decipher.ra
@@ -1,80 +1,89 @@
track decipherContainer
superTrack on
shortLabel DECIPHER
longLabel DECIPHER
cartVersion 7
group phenDis
track decipher
priority 1
shortLabel DECIPHER CNVs
longLabel DECIPHER CNVs
group phenDis
visibility pack
type bigBed 9 +
itemRgb on
tableBrowser off knownCanonToDecipher knownToDecipher decipherRaw
bigDataUrl /gbdb/$D/decipher/decipherCnv.bb
url https://www.deciphergenomics.org/patient/$$
urlLabel Decipher Patient View:
filter.size 0
filterByRange.size on
filterLimits.size 2:170487333
filterValues.variant_class Amplification,Copy-Number Gain,Deletion,Duplication,Duplication/Trip
filterValues.pathogenicity Benign,Likely Benign,Likely Pathogenic,Pathogenic,Uncertain,Unknown
mergeSpannedItems on
searchIndex name
#mouseOverField _mouseOver
mouseOver Position: $chrom:${chromStart}-${chromEnd}
Size of Variant: $size
Genotype: $genotype
Variant Class: $variant_class
Inheritance: $inheritance
Pathogenicity: $pathogenicity
Phenotypes: $phenotypes
html decipherContainer
parent decipherContainer
track decipherSnvs
priority 2
shortLabel DECIPHER SNVs
longLabel DECIPHER: Chromosomal Imbalance and Phenotype in Humans (SNVs)
group phenDis
visibility pack
color 0,0,0
type bed 4
tableBrowser off decipherSnvsRaw
prevExonText Left edge
nextExonText Right edge
html decipherContainer
parent decipherContainer
track decipherPopulation
priority 3
parent decipherContainer
type bigBed 9 +
shortLabel DECIPHER Population CNVs
longLabel DECIPHER: Population CNVs
bigDataUrl /gbdb/$D/decipher/population_cnv.bb
visibility pack
mouseOver Position: $chrom:${chromStart}-${chromEnd}
Type of CNV: $type
Frequency of CNV: $frequency
Number of Observations: $observations
Sample Size of Study: $sample_size
html decipherContainer
searchIndex name
noScoreFilter on
filterValues.type loss,gain,del/dup
filter.sample_size 0
+ track ddg2p
+ parent decipherContainer
+ shortLabel DDG2P
+ longLabel Developmental Disorders Gene2Phenotype (DDG2P)
+ type bigBed 9 +
+ bigDataUrl /gbdb/$D/ddg2p/ddg2p.bb
+ visibility pack
+ mouseOver G2P ID: ${g2p_id}
Variant Consequence: ${variant_consequence}
Disease Name: ${disease_name}
Pubmed IDs: ${publications}
Molecular Mechanism: ${molecular_mechanism}
Allelic Requirments: ${allelic_requirement}
Date of Last Review: ${date_of_last_review}
+ html decipherContainer
searchTable decipher
searchMethod exact
searchType bigBed
searchTable decipherPopulation
searchMethod exact
searchType bigBed
searchName decipherId
searchTable decipher
termRegex [0-9]+
searchType bed
searchPriority 50
searchName decipherSnvsId
searchTable decipherSnvs
termRegex [0-9]+
searchType bed
searchPriority 50