8aae31876e1061cfdae882f5d5e4f7ae9b5534df jnavarr5 Fri Sep 19 11:19:50 2025 -0700 Staging the DDG2P track for release, refs #35054 diff --git src/hg/makeDb/trackDb/human/decipher.ra src/hg/makeDb/trackDb/human/decipher.ra index d75726dadc1..e0d0484b222 100644 --- src/hg/makeDb/trackDb/human/decipher.ra +++ src/hg/makeDb/trackDb/human/decipher.ra @@ -1,80 +1,89 @@ track decipherContainer superTrack on shortLabel DECIPHER longLabel DECIPHER cartVersion 7 group phenDis track decipher priority 1 shortLabel DECIPHER CNVs longLabel DECIPHER CNVs group phenDis visibility pack type bigBed 9 + itemRgb on tableBrowser off knownCanonToDecipher knownToDecipher decipherRaw bigDataUrl /gbdb/$D/decipher/decipherCnv.bb url https://www.deciphergenomics.org/patient/$$ urlLabel Decipher Patient View: filter.size 0 filterByRange.size on filterLimits.size 2:170487333 filterValues.variant_class Amplification,Copy-Number Gain,Deletion,Duplication,Duplication/Trip filterValues.pathogenicity Benign,Likely Benign,Likely Pathogenic,Pathogenic,Uncertain,Unknown mergeSpannedItems on searchIndex name #mouseOverField _mouseOver mouseOver <b>Position</b>: $chrom:${chromStart}-${chromEnd}<br> <b>Size of Variant</b>: $size<br> <b>Genotype</b>: $genotype<br> <b>Variant Class</b>: $variant_class<br> <b>Inheritance</b>: $inheritance<br> <b>Pathogenicity</b>: $pathogenicity<br> <b>Phenotypes</b>: $phenotypes<br> html decipherContainer parent decipherContainer track decipherSnvs priority 2 shortLabel DECIPHER SNVs longLabel DECIPHER: Chromosomal Imbalance and Phenotype in Humans (SNVs) group phenDis visibility pack color 0,0,0 type bed 4 tableBrowser off decipherSnvsRaw prevExonText Left edge nextExonText Right edge html decipherContainer parent decipherContainer track decipherPopulation priority 3 parent decipherContainer type bigBed 9 + shortLabel DECIPHER Population CNVs longLabel DECIPHER: Population CNVs bigDataUrl /gbdb/$D/decipher/population_cnv.bb visibility pack mouseOver <b>Position</b>: $chrom:${chromStart}-${chromEnd}<br> <b>Type of CNV</b>: $type<br> <b>Frequency of CNV</b>: $frequency<br> <b>Number of Observations</b>: $observations<br> <b>Sample Size of Study</b>: $sample_size<br> html decipherContainer searchIndex name noScoreFilter on filterValues.type loss,gain,del/dup filter.sample_size 0 + track ddg2p + parent decipherContainer + shortLabel DDG2P + longLabel Developmental Disorders Gene2Phenotype (DDG2P) + type bigBed 9 + + bigDataUrl /gbdb/$D/ddg2p/ddg2p.bb + visibility pack + mouseOver <b>G2P ID:</b> ${g2p_id} <br> <b>Variant Consequence:</b> ${variant_consequence} <br> <b>Disease Name:</b> ${disease_name} <br> <b>Pubmed IDs:</b> ${publications} <br> <b>Molecular Mechanism:</b> ${molecular_mechanism} <br> <b>Allelic Requirments:</b> ${allelic_requirement} <br> <b>Date of Last Review:</b> ${date_of_last_review} + html decipherContainer searchTable decipher searchMethod exact searchType bigBed searchTable decipherPopulation searchMethod exact searchType bigBed searchName decipherId searchTable decipher termRegex [0-9]+ searchType bed searchPriority 50 searchName decipherSnvsId searchTable decipherSnvs termRegex [0-9]+ searchType bed searchPriority 50