cec653ec536e9a536256b3ebddc39be5ef9701c8 max Sun Sep 21 23:37:18 2025 -0700 adding spliceAi wt track, refs #35100 diff --git src/hg/makeDb/doc/hg38/spliceAI.txt src/hg/makeDb/doc/hg38/spliceAI.txt index 5d6c182c773..aacb0664506 100644 --- src/hg/makeDb/doc/hg38/spliceAI.txt +++ src/hg/makeDb/doc/hg38/spliceAI.txt @@ -54,17 +54,17 @@ positions = [int(s) for s in info.split('|')[6:10]] # Iterate over the zipped data for atype, score, position in zip(atypes.keys(), scores, positions): # Check if the score is greater than or equal to 0.02 if score >= 0.02: # make clear if position is upstream or downstream if position > 0: position = '+' + str(position) # print(f"Type: {atype}, Score: {score}, Position: {position}") AIwriter.writerow(['chr'+chrom, startpos, startpos+1, ref+'>'+alt, 0, '+', startpos, startpos, atypes[atype], score, atype, position, name]) END ) bedToBigBed -type=bed9+4 -tab -as=spliceAI.as spliceAI.bed /hive/data/genomes/hg38/chrom.sizes ~/public_html/trackHubs/spliceAIhub/hg38/spliceAI.bb - +# Got splice AI wildtype files as-is from Michael Hiller