cec653ec536e9a536256b3ebddc39be5ef9701c8
max
Sun Sep 21 23:37:18 2025 -0700
adding spliceAi wt track, refs #35100
diff --git src/hg/makeDb/trackDb/human/spliceAI.ra src/hg/makeDb/trackDb/human/spliceAI.ra
index 7cae86066ac..0ccf3638148 100644
--- src/hg/makeDb/trackDb/human/spliceAI.ra
+++ src/hg/makeDb/trackDb/human/spliceAI.ra
@@ -1,25 +1,26 @@
track spliceAI
compositeTrack on
shortLabel SpliceAI
longLabel SpliceAI: Splice Variant Prediction Score
group phenDis
parent spliceImpactSuper on
type bigBed 9 +
visibility dense
tableBrowser off
dataVersion Illumina SpliceAI Score v1.3 (August 22, 2024)
+priority 1
track spliceAIsnvs
type bigBed 9 +
priority 1
shortLabel SpliceAI SNVs
longLabel SpliceAI SNVs (unmasked)
parent spliceAI on
tableBrowser off
bigDataUrl /gbdb/$D/bbi/spliceAIsnvs.bb
itemRgb on
noScoreFilter on
filterValues.spliceType donor_gain|Donor gain,donor_loss|Donor loss,acceptor_gain|Acceptor gain,acceptor_loss|Acceptor loss
filterLabel.spliceType Splice type
filter.AIscore 0.02
filterLimits.AIscore 0.02:1
@@ -64,15 +65,24 @@
priority 1.3
type bigBed 9 +
shortLabel SpliceAI indels (masked)
longLabel SpliceAI Indels (masked)
parent spliceAI off
tableBrowser off
bigDataUrl /gbdb/$D/bbi/spliceAIindelsMasked.bb
itemRgb on
noScoreFilter on
filterValues.spliceType donor_gain|Donor gain,donor_loss|Donor loss,acceptor_gain|Acceptor gain,acceptor_loss|Acceptor loss
filterLabel.spliceType Splice type
filter.AIscore 0.02
filterLimits.AIscore 0.02:1
mouseOver Change: $name
Gene: $gene
Type of change: $spliceType
Affected splice location: $relativePos
Score: $AIscore
html spliceAI
+
+ track spliceAIWtDonorPlus
+ priority 1.4
+ type bigWig
+ shortLabel SpliceAI Wildtype Donor Plus
+ longLabel SpliceAI Wildtype Donor Sites on DNA Forward Strand
+ parent spliceAI off
+ bigDataUrl /gbdb/$D/bbi/spliceAi/wildtype/spliceAiDonorPlus.bw
+ html spliceAI