f6c778facb8d507287c93ae2c4027cd09e1e7b8b hiram Mon Sep 1 23:31:40 2025 -0700 improved priority business refs #32897 diff --git src/hg/lib/genomePriority.sql src/hg/lib/genomePriority.sql index 3c5b3361118..a0f53804d06 100644 --- src/hg/lib/genomePriority.sql +++ src/hg/lib/genomePriority.sql @@ -1,16 +1,20 @@ # genomePriority.sql was originally generated by the autoSql program, which also # generated genomePriority.c and genomePriority.h. This creates the database representation of # an object which can be loaded and saved from RAM in a fairly # automatic way. -#listing all UCSC genomes, dbDb or GenArk, with search priority +#listing all UCSC genomes, dbDb or GenArk, with search priority, and any potentila can be requested assembly CREATE TABLE genomePriority ( - name varchar(255) not null, # UCSC genome: dbDb name or GenArk accession - priority int unsigned not null, # assigned search priority - commonName varchar(255) not null, # a common name - scientificName varchar(255) not null, # binomial scientific name - taxId int unsigned not null, # Entrez taxon ID: www.ncbi.nlm.nih.gov/taxonomy/?term=xxx - description varchar(255) not null, # other description text + name varchar(255), # UCSC genome: dbDb name or GenArk/NCBI accession + priority int unsigned, # assigned search priority + commonName varchar(255), # a common name + scientificName varchar(255), # binomial scientific name + taxId int unsigned, # Entrez taxon ID: www.ncbi.nlm.nih.gov/taxonomy/?term=xxx + clade varchar(255), # approximate clade: primates mammals birds fish ... etc ... + description varchar(255), # other description text + browserExists tinyint unsigned, # 1 == this assembly is available at UCSC, 0 == can be requested + hubUrl varchar(255), # path name to hub.txt: GCF/000/001/405/GCF_000001405.39/hub.txt + FULLTEXT gIdx (name, commonName, scientificName, clade, description), #Indices PRIMARY KEY(name) );