0a3f8c738cfc06e5f7154258dd8a19dbc471c8d7
hiram
  Mon Sep 1 23:41:56 2025 -0700
improvements

diff --git src/hg/makeDb/doc/assemblyEquivalence/exact.sh src/hg/makeDb/doc/assemblyEquivalence/exact.sh
index 0a32760f20f..ea9891973c1 100755
--- src/hg/makeDb/doc/assemblyEquivalence/exact.sh
+++ src/hg/makeDb/doc/assemblyEquivalence/exact.sh
@@ -1,39 +1,42 @@
 #!/bin/bash
 
 onePair() {
 join -t$'\t' $1 $2 | cut -f2- | sort
 }
 
-#### Ensembl to the other three
-onePair ensembl/ensembl.keySignatures.txt ucsc/ucsc.keySignatures.txt \
-   > ensembl.ucsc.exact.txt
-onePair ucsc/ucsc.keySignatures.txt ensembl/ensembl.keySignatures.txt \
-   > ucsc.ensembl.exact.txt
-
-onePair ensembl/ensembl.keySignatures.txt refseq/refseq.keySignatures.txt \
-   > ensembl.refseq.exact.txt
-onePair refseq/refseq.keySignatures.txt ensembl/ensembl.keySignatures.txt \
-   > refseq.ensembl.exact.txt
+#### Ensembl rapidRelease to the other four
+# for T in ensembl ucsc refseq genbank
+for T in ensembl ucsc refseq genbank
+do
+onePair rapidRelease/rapidRelease.keySignatures.txt \
+    $T/$T.keySignatures.txt > rapidRelease.$T.exact.txt
+onePair $T/$T.keySignatures.txt \
+    rapidRelease/rapidRelease.keySignatures.txt > $T.rapidRelease.exact.txt
+done
 
-onePair ensembl/ensembl.keySignatures.txt genbank/genbank.keySignatures.txt \
-   > ensembl.genbank.exact.txt
-onePair genbank/genbank.keySignatures.txt ensembl/ensembl.keySignatures.txt \
-   > genbank.ensembl.exact.txt
+#### Ensembl to the other three
+# for T in ucsc refseq genbank
+for T in ucsc refseq genbank
+do
+onePair ensembl/ensembl.keySignatures.txt $T/$T.keySignatures.txt \
+   > ensembl.$T.exact.txt
+onePair $T/$T.keySignatures.txt ensembl/ensembl.keySignatures.txt \
+   > $T.ensembl.exact.txt
+done
 
 #### ucsc to the other two
-onePair ucsc/ucsc.keySignatures.txt refseq/refseq.keySignatures.txt \
-   > ucsc.refseq.exact.txt
-onePair refseq/refseq.keySignatures.txt ucsc/ucsc.keySignatures.txt \
-   > refseq.ucsc.exact.txt
-
-onePair ucsc/ucsc.keySignatures.txt genbank/genbank.keySignatures.txt \
-   > ucsc.genbank.exact.txt
-onePair genbank/genbank.keySignatures.txt ucsc/ucsc.keySignatures.txt \
-   > genbank.ucsc.exact.txt
+# for T in refseq genbank
+for T in refseq genbank
+do
+onePair ucsc/ucsc.keySignatures.txt $T/$T.keySignatures.txt \
+   > ucsc.$T.exact.txt
+onePair $T/$T.keySignatures.txt ucsc/ucsc.keySignatures.txt \
+   > $T.ucsc.exact.txt
+done
 
 #### genbank to refseq
 
 onePair refseq/refseq.keySignatures.txt genbank/genbank.keySignatures.txt \
    > refseq.genbank.exact.txt
 onePair genbank/genbank.keySignatures.txt refseq/refseq.keySignatures.txt \
    > genbank.refseq.exact.txt