51b12665a66876e1bbf7b022682a2050d4eb227d
braney
  Fri Sep 12 13:03:18 2025 -0700
some fixes for quickLifted custom tracks

diff --git src/hg/hgTracks/bedTrack.c src/hg/hgTracks/bedTrack.c
index 8148ccec56b..d6bb32fba3b 100644
--- src/hg/hgTracks/bedTrack.c
+++ src/hg/hgTracks/bedTrack.c
@@ -327,31 +327,31 @@
     else
         {
         char *table;
         if (isCustomTrack(tg->table))
             {
             liftDb = CUSTOM_TRASH;
             table = trackDbSetting(tg->tdb, "dbTableName");
             }
         else
             table = tg->table;
         struct hash *chainHash = newHash(8);
         struct sqlConnection *conn = hAllocConn(liftDb);
         char *quickLiftFile = cloneString(trackDbSetting(tg->tdb, "quickLiftUrl"));
         bed = (struct bed *)quickLiftSql(conn, quickLiftFile, table, chromName, winStart, winEnd,  NULL, scoreFilterClause, (ItemLoader2)bedLoadN, 9, chainHash);
 
-        struct bed *liftedBeds = quickLiftBeds(bed, chainHash, TRUE);
+        struct bed *liftedBeds = quickLiftBeds(bed, chainHash, FALSE);
         for(bed = liftedBeds; bed; bed = bed->next)
             {
             lf = lfFromBedExtra(bed, scoreMin, scoreMax);
             if (useItemRgb)
                 {
                 lf->useItemRgb = TRUE;
                 lf->filterColor=bed->itemRgb;
                 }
             slAddHead(&lfList, lf);
             }
         hFreeConn(&conn);
         }
     }
 slReverse(&lfList);
 slSort(&lfList, linkedFeaturesCmp);