7d44b7fe975dd2c2772e0c64d30de9116bea66b8
markd
  Mon Sep 8 20:56:48 2025 -0700
GENCODE V49lift38 release

diff --git src/hg/makeDb/doc/hg19.gencode.txt src/hg/makeDb/doc/hg19.gencode.txt
index d1017efa474..db76dbfa2e1 100644
--- src/hg/makeDb/doc/hg19.gencode.txt
+++ src/hg/makeDb/doc/hg19.gencode.txt
@@ -1404,43 +1404,44 @@
     # edit all.joiner to add ~/tmp/gencodeV${ver}.joiner
 
     # if final release, Update 'Release Notes' 
     #  human/hg19/wgEncodeGencodeSuper.html
 
     jkmake DBS=hg19
 
     # check joiner 
     pushd /hive/data/genomes/hg19/bed/gencodeV${ver}/hgcImport${pre}
     make  -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk joinerCheck
 
     # check tracks in browser sandbox
     # commit all
     jkmake DBS=hg19 alpha
 #########################################################################
-: import of UCSC GENCODE group processing of GENCODE V49lift38 pre-release for GENCODE Versions (markd)
+2025-08-29: import of UCSC GENCODE group processing of GENCODE V49lift38 pre-release for GENCODE Versions (markd)
+2025-09-08: import of UCSC GENCODE group processing of GENCODE V49lift38 release for GENCODE Versions (markd)
    # edit hg/makeDb/outside/gencode/gencodeLoad.mk to set release type and versions
 
    # pre-release shell variables 
        ver=49lift37
        ensver=115
        pre="Pre"
        ensdate='July 2025 pre-release' 
    # release shell variables 
        ver=49lift37
        ensver=115
        pre=""
-       ensdate='August 2025' 
+       ensdate='Sept 2025' 
     
     # download, build and load tables
     mkdir -p /hive/data/genomes/hg19/bed/gencodeV${ver}/hgcImport${pre}
     pushd /hive/data/genomes/hg19/bed/gencodeV${ver}/hgcImport${pre}
 
     (time nice make -O -j 32 -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk) >&build.1.out&
 
 
     # compare tables from previous release to see if number changed makes
     # sense.  Results are in gencode-cmp.tsv
 
     # generate trackDb and joiner blurb
     pushd
     ../outside/gencode/bin/gencodeGenerateTrackDbs hg19 ${ver} ${ensver} "${ensdate}"