eb5c9cd277c2bcd521aa461d06e9d8a32509c1d3
braney
  Thu Oct 9 12:17:30 2025 -0700
make it possible to use a cart variable in addition to an hg.conf
variable to turn on quickLift

diff --git src/hg/inc/quickLift.h src/hg/inc/quickLift.h
index 6169d6a36f0..f0bde6307eb 100644
--- src/hg/inc/quickLift.h
+++ src/hg/inc/quickLift.h
@@ -41,30 +41,33 @@
 
 struct bigBedInterval *quickLiftGetIntervals(char *instaPortFile, struct bbiFile *bbi,   char *chrom, int start, int end, struct hash **pChainHash);
 /* Return intervals from "other" species that will map to the current window.
  * These intervals are NOT YET MAPPED to the current assembly.
  */
 
 struct bed *quickLiftIntervalsToBed(struct bbiFile *bbi, struct hash *chainHash, struct bigBedInterval *bb);
 /* Using chains stored in chainHash, port a bigBedInterval from another assembly to a bed
  * on the reference.
  */
 
 struct slList *quickLiftSql(struct sqlConnection *conn, char *quickLiftFile, char *table, char *chromName, int winStart, int winEnd,  char *query, char *extraWhere, ItemLoader2 loader, int numFields, struct hash *chainHash);
 /* Load a list of items (usually beds) from another database in a region that corresponds to chromName:winStart-winEnd in the reference database.
  * Fill a hash with the chains that were used to map the desired range.  These chains will be used to map the query side items back to the reference. */
 
-unsigned quickLiftGetChain(char *fromDb, char *toDb);
+unsigned quickLiftGetChainId(struct cart *, char *fromDb, char *toDb);
 /* Return the id from the quickLiftChain table for given assemblies. */
 
+char *quickLiftGetChainPath(struct cart *, char *fromDb, char *toDb);
+/* Return the path from the quickLiftChain table for given assemblies. */
+
 struct bed *quickLiftBeds(struct bed *bedList, struct hash *chainHash, boolean blocked);
 // Map a list of bedd in query coordinates to our current reference
 
-boolean quickLiftEnabled();
+boolean quickLiftEnabled(struct cart *cart);
 /* Return TRUE if feature is available */
 
 struct quickLiftRegions *quickLiftGetRegions(char *ourDb, char *liftDb, char *quickLiftFile, char *chrom, int seqStart, int seqEnd);
 /* Figure out the highlight regions and cache them. */
 
 char *quickLiftChainTable();
 /* Return the name of the quickLiftChain table. */
 #endif