09b6b14cd006dcf74ed1b2415a58b85f36c5af3d
max
Mon Oct 6 16:18:54 2025 -0700
removing confusing spliceAIWtDonorPlus track, refs #35100
diff --git src/hg/makeDb/trackDb/human/spliceAI.ra src/hg/makeDb/trackDb/human/spliceAI.ra
index 0ccf3638148..4ade97fef61 100644
--- src/hg/makeDb/trackDb/human/spliceAI.ra
+++ src/hg/makeDb/trackDb/human/spliceAI.ra
@@ -1,88 +1,79 @@
track spliceAI
compositeTrack on
shortLabel SpliceAI
longLabel SpliceAI: Splice Variant Prediction Score
group phenDis
parent spliceImpactSuper on
type bigBed 9 +
visibility dense
tableBrowser off
dataVersion Illumina SpliceAI Score v1.3 (August 22, 2024)
priority 1
track spliceAIsnvs
type bigBed 9 +
priority 1
shortLabel SpliceAI SNVs
longLabel SpliceAI SNVs (unmasked)
parent spliceAI on
tableBrowser off
bigDataUrl /gbdb/$D/bbi/spliceAIsnvs.bb
itemRgb on
noScoreFilter on
filterValues.spliceType donor_gain|Donor gain,donor_loss|Donor loss,acceptor_gain|Acceptor gain,acceptor_loss|Acceptor loss
filterLabel.spliceType Splice type
filter.AIscore 0.02
filterLimits.AIscore 0.02:1
mouseOver Change: $name
Gene: $gene
Type of change: $spliceType
Affected splice location: $relativePos
Score: $AIscore
html spliceAI
track spliceAIindels
priority 1.1
type bigBed 9 +
shortLabel SpliceAI indels
longLabel SpliceAI Indels (unmasked)
parent spliceAI on
tableBrowser off
bigDataUrl /gbdb/$D/bbi/spliceAIindels.bb
itemRgb on
noScoreFilter on
filterValues.spliceType donor_gain|Donor gain,donor_loss|Donor loss,acceptor_gain|Acceptor gain,acceptor_loss|Acceptor loss
filterLabel.spliceType Splice type
filter.AIscore 0.02
filterLimits.AIscore 0.02:1
mouseOver Change: $name
Gene: $gene
Type of change: $spliceType
Affected splice location: $relativePos
Score: $AIscore
html spliceAI
track spliceAIsnvsMasked
priority 1.2
type bigBed 9 +
shortLabel SpliceAI SNVs (masked)
longLabel SpliceAI SNVs (masked)
parent spliceAI off
tableBrowser off
bigDataUrl /gbdb/$D/bbi/spliceAIsnvsMasked.bb
itemRgb on
noScoreFilter on
filterValues.spliceType donor_gain|Donor gain,donor_loss|Donor loss,acceptor_gain|Acceptor gain,acceptor_loss|Acceptor loss
filterLabel.spliceType Splice type
filter.AIscore 0.02
filterLimits.AIscore 0.02:1
mouseOver Change: $name
Gene: $gene
Type of change: $spliceType
Affected splice location: $relativePos
Score: $AIscore
html spliceAI
track spliceAIindelsMasked
priority 1.3
type bigBed 9 +
shortLabel SpliceAI indels (masked)
longLabel SpliceAI Indels (masked)
parent spliceAI off
tableBrowser off
bigDataUrl /gbdb/$D/bbi/spliceAIindelsMasked.bb
itemRgb on
noScoreFilter on
filterValues.spliceType donor_gain|Donor gain,donor_loss|Donor loss,acceptor_gain|Acceptor gain,acceptor_loss|Acceptor loss
filterLabel.spliceType Splice type
filter.AIscore 0.02
filterLimits.AIscore 0.02:1
mouseOver Change: $name
Gene: $gene
Type of change: $spliceType
Affected splice location: $relativePos
Score: $AIscore
html spliceAI
-
- track spliceAIWtDonorPlus
- priority 1.4
- type bigWig
- shortLabel SpliceAI Wildtype Donor Plus
- longLabel SpliceAI Wildtype Donor Sites on DNA Forward Strand
- parent spliceAI off
- bigDataUrl /gbdb/$D/bbi/spliceAi/wildtype/spliceAiDonorPlus.bw
- html spliceAI