09b6b14cd006dcf74ed1b2415a58b85f36c5af3d max Mon Oct 6 16:18:54 2025 -0700 removing confusing spliceAIWtDonorPlus track, refs #35100 diff --git src/hg/makeDb/trackDb/human/spliceAI.ra src/hg/makeDb/trackDb/human/spliceAI.ra index 0ccf3638148..4ade97fef61 100644 --- src/hg/makeDb/trackDb/human/spliceAI.ra +++ src/hg/makeDb/trackDb/human/spliceAI.ra @@ -1,88 +1,79 @@ track spliceAI compositeTrack on shortLabel SpliceAI longLabel SpliceAI: Splice Variant Prediction Score group phenDis parent spliceImpactSuper on type bigBed 9 + visibility dense tableBrowser off dataVersion Illumina SpliceAI Score v1.3 (August 22, 2024) priority 1 track spliceAIsnvs type bigBed 9 + priority 1 shortLabel SpliceAI SNVs longLabel SpliceAI SNVs (unmasked) parent spliceAI on tableBrowser off bigDataUrl /gbdb/$D/bbi/spliceAIsnvs.bb itemRgb on noScoreFilter on filterValues.spliceType donor_gain|Donor gain,donor_loss|Donor loss,acceptor_gain|Acceptor gain,acceptor_loss|Acceptor loss filterLabel.spliceType Splice type filter.AIscore 0.02 filterLimits.AIscore 0.02:1 mouseOver <b>Change:</b> $name<br><b>Gene:</b> $gene<br><b>Type of change:</b> $spliceType<br><b>Affected splice location:</b> $relativePos<br><b>Score:</b> $AIscore html spliceAI track spliceAIindels priority 1.1 type bigBed 9 + shortLabel SpliceAI indels longLabel SpliceAI Indels (unmasked) parent spliceAI on tableBrowser off bigDataUrl /gbdb/$D/bbi/spliceAIindels.bb itemRgb on noScoreFilter on filterValues.spliceType donor_gain|Donor gain,donor_loss|Donor loss,acceptor_gain|Acceptor gain,acceptor_loss|Acceptor loss filterLabel.spliceType Splice type filter.AIscore 0.02 filterLimits.AIscore 0.02:1 mouseOver <b>Change:</b> $name<br><b>Gene:</b> $gene<br><b>Type of change:</b> $spliceType<br><b>Affected splice location:</b> $relativePos<br><b>Score:</b> $AIscore html spliceAI track spliceAIsnvsMasked priority 1.2 type bigBed 9 + shortLabel SpliceAI SNVs (masked) longLabel SpliceAI SNVs (masked) parent spliceAI off tableBrowser off bigDataUrl /gbdb/$D/bbi/spliceAIsnvsMasked.bb itemRgb on noScoreFilter on filterValues.spliceType donor_gain|Donor gain,donor_loss|Donor loss,acceptor_gain|Acceptor gain,acceptor_loss|Acceptor loss filterLabel.spliceType Splice type filter.AIscore 0.02 filterLimits.AIscore 0.02:1 mouseOver <b>Change:</b> $name<br><b>Gene:</b> $gene<br><b>Type of change:</b> $spliceType<br><b>Affected splice location:</b> $relativePos<br><b>Score:</b> $AIscore html spliceAI track spliceAIindelsMasked priority 1.3 type bigBed 9 + shortLabel SpliceAI indels (masked) longLabel SpliceAI Indels (masked) parent spliceAI off tableBrowser off bigDataUrl /gbdb/$D/bbi/spliceAIindelsMasked.bb itemRgb on noScoreFilter on filterValues.spliceType donor_gain|Donor gain,donor_loss|Donor loss,acceptor_gain|Acceptor gain,acceptor_loss|Acceptor loss filterLabel.spliceType Splice type filter.AIscore 0.02 filterLimits.AIscore 0.02:1 mouseOver <b>Change:</b> $name<br><b>Gene:</b> $gene<br><b>Type of change:</b> $spliceType<br><b>Affected splice location:</b> $relativePos<br><b>Score:</b> $AIscore html spliceAI - - track spliceAIWtDonorPlus - priority 1.4 - type bigWig - shortLabel SpliceAI Wildtype Donor Plus - longLabel SpliceAI Wildtype Donor Sites on DNA Forward Strand - parent spliceAI off - bigDataUrl /gbdb/$D/bbi/spliceAi/wildtype/spliceAiDonorPlus.bw - html spliceAI