4c06071f44d989e9e20b7b896b717a65c3040deb bwick Mon Sep 22 17:08:13 2025 -0700 Adding cronjob for Cell Browser that updates facets .json files. diff --git src/hg/utils/otto/otto.crontab src/hg/utils/otto/otto.crontab index 178b1962697..8ae51a6221b 100644 --- src/hg/utils/otto/otto.crontab +++ src/hg/utils/otto/otto.crontab @@ -126,30 +126,35 @@ 03 01 * * * /hive/data/inside/GenArk/pushRR/pushRR.sh #NCBI RefSeq 23 8 * * 3 /hive/data/outside/otto/ncbiRefSeq/ottoNcbiRefSeq.sh #Index page public session thumbnails update MAILTO=otto-group@ucsc.edu 11 1 * * 4 /cluster/software/bin/python /cluster/bin/scripts/buildPublicSessionThumbnailsIndexPage.py /usr/local/apache/htdocs/ #OMIM Upload HGDB_CONF=/cluster/home/otto/.hg.conf.beta 15 05 * * * /hive/data/outside/otto/omim/omimUploadWrapper.sh MAILTO=cells@ucsc.edu # Cell Browser news sec update by Matt/Brittney Sept 2022 -04 12 * * 1-5 ~bwick/miniconda3/bin/python3.8 ~bwick/cellBrowser/ucsc/updateNewsSec -r +0 0 * * 1-5 ~bwick/miniconda3/bin/python3.8 ~bwick/cellBrowser/ucsc/updateNewsSec -r + +# update Cell Browser .json facets files using tabulate_facets.pl +0 0 * * 1-5 cd /usr/local/apache/htdocs-cells-submit/facets && ~bwick/cellBrowser/ucsc/tabulate_facets.pl /usr/local/apache/htdocs-cells-beta/dataset.json +0 0 * * 1-5 /usr/local/apache/htdocs-cells-submit/facets/tsv_to_json.py + # Malacards update. Not done monthly, but running monthly anyways, as they don't have a fixed schedule #Format: Minute - Hour - DayofMonth month Day-of-week MAILTO=mhaeussl@ucsc.edu 04 04 20 * * /hive/data/outside/otto/malacards/update.sh MAILTO=jbirgmei@ucsc.edu # PubTator3 dbSNP track update 28 08 * * * /bin/zsh -c 'cd /hive/data/outside/otto/pubtatorDbSnp && ./doUpdate.sh' MAILTO=cvaske@ucsc.edu # CIViC update. Releases are typically on the 1st of the month 12 12 2 * * /hive/data/outside/otto/civic/doCivicUpdate.sh