7ebf86ace6ddda4200ba4e481d12ad7e0ae67a78 bwick Wed Sep 24 14:11:29 2025 -0700 Adding missing cd statement and fixing file not found error diff --git src/hg/utils/otto/otto.crontab src/hg/utils/otto/otto.crontab index 8ae51a6221b..12b0c825023 100644 --- src/hg/utils/otto/otto.crontab +++ src/hg/utils/otto/otto.crontab @@ -128,33 +128,33 @@ #NCBI RefSeq 23 8 * * 3 /hive/data/outside/otto/ncbiRefSeq/ottoNcbiRefSeq.sh #Index page public session thumbnails update MAILTO=otto-group@ucsc.edu 11 1 * * 4 /cluster/software/bin/python /cluster/bin/scripts/buildPublicSessionThumbnailsIndexPage.py /usr/local/apache/htdocs/ #OMIM Upload HGDB_CONF=/cluster/home/otto/.hg.conf.beta 15 05 * * * /hive/data/outside/otto/omim/omimUploadWrapper.sh MAILTO=cells@ucsc.edu # Cell Browser news sec update by Matt/Brittney Sept 2022 0 0 * * 1-5 ~bwick/miniconda3/bin/python3.8 ~bwick/cellBrowser/ucsc/updateNewsSec -r -# update Cell Browser .json facets files using tabulate_facets.pl +# Update Cell Browser .json facets files using tabulate_facets.pl 0 0 * * 1-5 cd /usr/local/apache/htdocs-cells-submit/facets && ~bwick/cellBrowser/ucsc/tabulate_facets.pl /usr/local/apache/htdocs-cells-beta/dataset.json -0 0 * * 1-5 /usr/local/apache/htdocs-cells-submit/facets/tsv_to_json.py +0 0 * * 1-5 cd /usr/local/apache/htdocs-cells-submit/facets && /usr/local/apache/htdocs-cells-submit/facets/tsv_to_json.py # Malacards update. Not done monthly, but running monthly anyways, as they don't have a fixed schedule #Format: Minute - Hour - DayofMonth month Day-of-week MAILTO=mhaeussl@ucsc.edu 04 04 20 * * /hive/data/outside/otto/malacards/update.sh MAILTO=jbirgmei@ucsc.edu # PubTator3 dbSNP track update 28 08 * * * /bin/zsh -c 'cd /hive/data/outside/otto/pubtatorDbSnp && ./doUpdate.sh' MAILTO=cvaske@ucsc.edu # CIViC update. Releases are typically on the 1st of the month 12 12 2 * * /hive/data/outside/otto/civic/doCivicUpdate.sh