f50fbe16a5fe95c1e0c1a84e88b689f06e9c682f
gperez2
  Fri Sep 26 17:46:49 2025 -0700
Replacing the Assembly Hub wiki links with the new Assembly Hub User Guide page, refs #34740

diff --git src/hg/htdocs/FAQ/FAQlink.html src/hg/htdocs/FAQ/FAQlink.html
index 48086be95a9..1ca48ee863e 100755
--- src/hg/htdocs/FAQ/FAQlink.html
+++ src/hg/htdocs/FAQ/FAQlink.html
@@ -338,31 +338,31 @@
 (hideTracks=1), hides the subtrack kids of a particular track (gtexRnaSignalMaleYoung_hideKids=1),
 sets a specific subtrack to be displayed (gtexRnaSignalSRR1311243=full), and ignores user settings
 (ignoreCookie=1).</p>
 <pre><a href="../cgi-bin/hgTracks?db=hg19&hubUrl=http://hgdownload.soe.ucsc.edu/hubs/gtex/hub.txt&hideTracks=1&gtexRnaSignalMaleYoung_hideKids=1&gtexRnaSignalMaleYoung=full&gtexRnaSignalSRR1311243=full&ignoreCookie=1">https://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&hubUrl=http://hgdownload.soe.ucsc.edu/hubs/gtex/hub.txt&hideTracks=1&amp;gtexRnaSignalMaleYoung_hideKids=1&amp;gtexRnaSignalMaleYoung=full&amp;gtexRnaSignalSRR1311243=full&ignoreCookie=1</a></pre>
 
 <p>
 To link to an assembly hub and display data on a non-natively supported genome, the same 
 parameters apply. To specify the intended genome assembly, instead of using <code>db=</code>,
 you must use <code>genome=araTha1</code>, where araTha1 is the assembly name set by
 your genomes.txt file in the line <code>genome araTha1</code>.</p>
 <pre><a href=../cgi-bin/hgTracks?genome=araTha1&hubUrl=http://genome.ucsc.edu/goldenPath/help/examples/hubExamples/hubAssembly/plantAraTha1/hub.txt>https://genome.ucsc.edu/cgi-bin/hgTracks?genome=araTha1&hubUrl=http://genome.ucsc.edu/goldenPath/help/examples/hubExamples/hubAssembly/plantAraTha1/hub.txt</a></pre>
 <p>
 To see the files behind that assembly hub, please visit the
 <a href="../goldenPath/help/examples/hubExamples/hubAssembly/plantAraTha1/">
 hub's directory</a>. For more information on assembly hubs in general, please see the
-<a href="http://genomewiki.ucsc.edu/index.php/Assembly_Hubs" target ="_blank">assembly hub wiki</a>, the <a
+<a href="../goldenPath/help/assemblyHubHelp.html" target ="_blank">assembly hub user guide</a>, the <a
 href="../goldenPath/help/hgTrackHubHelp.html">track hub user guide</a>,
 or the <a href=../goldenPath/help/hubQuickStartAssembly.html>quick start guide
 to assembly hubs</a>.
 </p>
 <h6 id="hubClear">Use <code>hubClear=</code> to remove hubs at the same location</h6>
 <p>
 Another feature one can use in place of <code>hubUrl=</code> is
 <code>hubClear=</code>, which will load a hub while simultaneously disconnecting
 or clearing, hubs located at the same location. For example, adding
 <code>hubClear=http://university.edu/lab/folder/hub10.txt</code> would connect the
 referenced hub10.txt while simultaneously disconnecting any hubs that might be
 displayed from  the same <code>http://university.edu/lab/folder/</code> directory
 (for example, hub1.txt, hub2.txt, etc.). This feature can be useful for dynamically
 generated hubs that might collect in the browser otherwise.
 </p>