Commits for jcasper

v488_base to v489_preview (2025-09-22 to 2025-09-29) v489

e195c2f36763631c5985c734ff6d1334e3e4c8db Sun Sep 28 01:11:19 2025 -0700

• Installing updated hg.conf files from UCSC servers
  • confs/asia.hg.conf - lines changed 3, context: html, text, full: html, text
  • confs/euro.hg.conf - lines changed 3, context: html, text, full: html, text
  • confs/hgwdev.hg.conf - lines changed 1, context: html, text, full: html, text
  • confs/rr.hg.conf - lines changed 3, context: html, text, full: html, text

100a103b5311c0c22fd2aa3705b366da08542198 Sun Sep 28 23:59:52 2025 -0700

• V49 knownGene trackDb
  • src/hg/makeDb/trackDb/human/hg38/knownGeneArchive.ra - lines changed 29, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/knownGeneV49.html - lines changed 168, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 2, context: html, text, full: html, text

2d78f7651d5a78740cf16d032e2fc702a3e24342 Mon Sep 29 00:11:16 2025 -0700

• knownGeneV49 makedoc, refs #36169
  • src/hg/makeDb/doc/ucscGenes/hg38.gencodeV49.sh - lines changed 37, context: html, text, full: html, text

535fdd04a3ab8f4dc566b81eca9af50064492bfa Mon Sep 29 12:13:17 2025 -0700

• V49lift37 knownGene trackDb
  • src/hg/makeDb/trackDb/human/hg19/knownGene.alpha.ra - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/knownGeneArchive.ra - lines changed 26, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/knownGeneV49lift37.html - lines changed 167, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 2, context: html, text, full: html, text

9503a0661f3e9d5c1a265bff94d958076d0f1d8c Mon Sep 29 12:53:12 2025 -0700

• Makedoc for knownGene V49lift37, refs #36167
  • src/hg/makeDb/doc/ucscGenes/hg19.gencodeV49lift37.sh - lines changed 23, context: html, text, full: html, text