068dc3da618e5c90dc3380622faa7a8e83a89bcb jnavarr5 Wed Sep 24 18:03:14 2025 -0700 Adding a link to the indexNews page. Fixing the title of the post, refs #34120 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 12f0401fdbc..07d4bd84763 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -83,31 +83,31 @@ <p> The pm151 regions are used to filter spurious variant calls in centromeres, long repeats, and other genomic regions where short-read mapping is often problematic. They cover 88.2% of hg38, 92.2% of coding regions, and 96.3% of ClinVar pathogenic variants. The track can be used to filter variant calls for clinical or research human samples. It shows regions that are easy to sequence, rather than those that are problematic. The data was derived from the HPRC assemblies, and this track presents the 151b-easy panmask set.</p> <p> We would like to thank the <a href="https://hlilab.github.io/" target="_blank">HLi lab</a> at Harvard Medical School for making this data available. We would also like to thank Max Haeussler and Gerardo Perez for their efforts on this release.</p> --> <a name="092425"></a> -<h2>Sep. 24, 2025 CoLoRSdb Small and Structure variants for hg38 and hs1</h2> +<h2>Sep. 24, 2025 CoLoRSdb small and structure variants for hg38 and hs1</h2> <p> We are excited to announce the release of the CoLoRSdb Small and Structural Variant tracks for the human assemblies <a href="/cgi-bin/hgTrackUi?db=hg38&g=structuralVariants&position=default" target="_blank">GRCh38/hg38</a> and <a href="/cgi-bin/hgTrackUi?db=hs1&g=hub_3671779_structuralVariants&position=default" target="_blank">CHM13/hs1</a>. These tracks provide a comprehensive catalog of genetic variation discovered through long-read whole genome sequencing, contributed by the international <a href="https://colorsdb.org" target="_blank">Consortium of Long Read Sequencing (CoLoRS)</a>. The small variant tracks (DeepVariant + GLnexus) contain single nucleotide polymorphisms (SNPs) and short indels, while the structural variant tracks (pbsv + Jasmine) display larger events including insertions, deletions, and inversions. Long-read sequencing technology improves sensitivity in repetitive regions and provides more precise breakpoint resolution than short-read approaches, enabling accurate visualization of complex loci in the Genome Browser.</p> <p> Each track includes allele frequency and sample count annotations, with additional filtering options