a6e1b8d8399b6f62b8b02d4082437caeb452fa42 jnavarr5 Thu Sep 25 15:38:08 2025 -0700 Fixing typos and differences between the track description page and the mouseOver tooltip, refs #36405 diff --git src/hg/makeDb/trackDb/human/decipher.ra src/hg/makeDb/trackDb/human/decipher.ra index fbaed59ad70..1f60590ecca 100644 --- src/hg/makeDb/trackDb/human/decipher.ra +++ src/hg/makeDb/trackDb/human/decipher.ra @@ -1,91 +1,91 @@ track decipherContainer superTrack on shortLabel DECIPHER longLabel DECIPHER cartVersion 7 group phenDis pennantIcon Updated red ../goldenPath/newsarch.html#091925 "Added the DDG2P track Sep. 19, 2025" track decipher priority 1 shortLabel DECIPHER CNVs longLabel DECIPHER CNVs group phenDis visibility pack type bigBed 9 + itemRgb on tableBrowser off knownCanonToDecipher knownToDecipher decipherRaw bigDataUrl /gbdb/$D/decipher/decipherCnv.bb url https://www.deciphergenomics.org/patient/$$ urlLabel Decipher Patient View: filter.size 0 filterByRange.size on filterLimits.size 2:170487333 filterValues.variant_class Amplification,Copy-Number Gain,Deletion,Duplication,Duplication/Trip filterValues.pathogenicity Benign,Likely Benign,Likely Pathogenic,Pathogenic,Uncertain,Unknown mergeSpannedItems on searchIndex name #mouseOverField _mouseOver mouseOver Position: $chrom:${chromStart}-${chromEnd}
Size of Variant: $size
Genotype: $genotype
Variant Class: $variant_class
Inheritance: $inheritance
Pathogenicity: $pathogenicity
Phenotypes: $phenotypes
html decipherContainer parent decipherContainer track decipherSnvs priority 2 shortLabel DECIPHER SNVs longLabel DECIPHER: Chromosomal Imbalance and Phenotype in Humans (SNVs) group phenDis visibility pack color 0,0,0 type bed 4 tableBrowser off decipherSnvsRaw prevExonText Left edge nextExonText Right edge html decipherContainer parent decipherContainer track decipherPopulation priority 3 parent decipherContainer type bigBed 9 + shortLabel DECIPHER Population CNVs longLabel DECIPHER: Population CNVs bigDataUrl /gbdb/$D/decipher/population_cnv.bb visibility pack mouseOver Position: $chrom:${chromStart}-${chromEnd}
Type of CNV: $type
Frequency of CNV: $frequency
Number of Observations: $observations
Sample Size of Study: $sample_size
html decipherContainer searchIndex name noScoreFilter on filterValues.type loss,gain,del/dup filter.sample_size 0 track ddg2p parent decipherContainer shortLabel DDG2P longLabel Developmental Disorders Gene2Phenotype (DDG2P) type bigBed 9 + bigDataUrl /gbdb/$D/ddg2p/ddg2p.bb visibility pack - mouseOver G2P ID: ${g2p_id}
Variant Consequence: ${variant_consequence}
Disease Name: ${disease_name}
Pubmed IDs: ${publications}
Molecular Mechanism: ${molecular_mechanism}
Allelic Requirments: ${allelic_requirement}
Date of Last Review: ${date_of_last_review} + mouseOver G2P ID: ${g2p_id}
Variant Consequence: ${variant_consequence}
Disease Name: ${disease_name}
Pubmed IDs: ${publications}
Molecular Mechanism: ${molecular_mechanism}
Allelic Requirements: ${allelic_requirement}
Date of Last Review: ${date_of_last_review} html decipherContainer pennantIcon New red ../goldenPath/newsarch.html#091925 "Released Sep. 19, 2025" searchTable decipher searchMethod exact searchType bigBed searchTable decipherPopulation searchMethod exact searchType bigBed searchName decipherId searchTable decipher termRegex [0-9]+ searchType bed searchPriority 50 searchName decipherSnvsId searchTable decipherSnvs termRegex [0-9]+ searchType bed searchPriority 50