10271a8f9e23612d541e7907ddb691fc81f369d3
gperez2
  Wed Oct 15 16:54:35 2025 -0700
Adding a SpliceAI Wildtype section under Display Conventions and Configuration, refs #35100

diff --git src/hg/makeDb/trackDb/human/spliceImpactSuper.html src/hg/makeDb/trackDb/human/spliceImpactSuper.html
index e0ab97db475..c2f3d795d29 100644
--- src/hg/makeDb/trackDb/human/spliceImpactSuper.html
+++ src/hg/makeDb/trackDb/human/spliceImpactSuper.html
@@ -97,30 +97,37 @@
 <ul>
 <li><b><font color="#FF8000">Predicted impact on splicing: Score &gt;&#61; 0.2 </font></b> </li>
 <li><b><font color="#808080">Not informative: Score &lt; 0.2 and &gt; 0.1 </font></b> </li>
 <li><b><font color="#0000FF">No impact on splicing: Score &lt;&#61; 0.1 </font></b> </li>
 </ul>
 </p>
 Mouseover on items shows the variant, gene name, type of change (donor gain/loss, acceptor
 gain/loss), location of affected cryptic splice, and spliceAI score. Clicking on any item brings up
 a table with this information.
 </p>
 <p>
 The scores range from 0 to 1 and can be interpreted as the
 probability of the variant being splice-altering. In the paper, a detailed characterization is
 provided for 0.2 (high recall), 0.5 (recommended), and 0.8 (high precision) cutoffs.</p>
 
+<h3>SpliceAI Wildtype</h3>
+<p>
+These tracks are in bigWig format. The signal height represents the SpliceAI probability score.
+This track may be configured in a variety of ways to highlight different aspects of the displayed
+information. Click the "Graph configuration help" link for an explanation of configuration
+options.</p>
+
 <h3>SpliceVarDB</h3>
 <p>According to the strength of their supporting
 evidence, variants were classified as &quot;splice-altering&quot; (~25%), &quot;not
 splice-altering&quot; (~25%), and &quot;low-frequency splice-altering&quot; (~50%), which
 correspond to weak or indeterminate evidence of spliceogenicity. 55% of the
 splice-altering variants in SpliceVarDB are outside the canonical splice sites
 (5.6% are deep intronic). The data is shown as lollipop plots that can be clicked, 
 the details page then shows a link to SpliceVarDB with full details.
 </p>
 
 <p>The classification thresholds primarily follow those established by the original study.
 However, most studies only defined criteria for splice-altering variants and did not define
 criteria for variants that resulted in normal splicing. The authors implemented stringent
 thresholds to define the normal category and ensure a high-quality set of control variants.
 Variants that did not meet these criteria were classified as low-frequency splice-altering