d6b429ab3e6d240e3ae97c85d1ec15b049ea237b gperez2 Tue Oct 14 14:53:11 2025 -0700 Edits to the Credits section regarding SpliceAI, refs #35100 diff --git src/hg/makeDb/trackDb/human/spliceImpactSuper.html src/hg/makeDb/trackDb/human/spliceImpactSuper.html index ea2669ce8bd..e0ab97db475 100644 --- src/hg/makeDb/trackDb/human/spliceImpactSuper.html +++ src/hg/makeDb/trackDb/human/spliceImpactSuper.html @@ -229,33 +229,35 @@ <br> <tt>bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg19/splicevardb/SVADB.bb -chrom=chr21 -start=0 -end=100000000 stdout</tt> <br> <tt>bigWigToBedGraph -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg38/bbi/spliceAi/wildtype/spliceAiAcceptorMinus.bw stdout</tt> <br> <br> These tools can be compiled from the source code or downloaded as a precompiled binary for your system. Instructions for downloading source code and binaries can be found <a href="http://hgdownload.soe.ucsc.edu/downloads.html#utilities_downloads">here</a>.</p> <h2>Credits</h2> -<p>Thanks to Illumina for making available SpliceAI, both the model and the precomputed data files.</p> +<p>Thanks to Illumina for making SpliceAI available, both the model and the precomputed data files.</p> -<p>Thanks to Francois Lecoquierre from the University of Oxford, Jean-Madeleine de Sainte Agathe from Institut Pasteur Paris and Michael Hiller from the Senckenberg Museum Frankfurt for suggesting and then creating the SpliceAI wildtype annotations.</p> +<p>Thanks to Francois Lecoquierre from the University of Oxford, Jean-Madeleine de Sainte Agathe +from Institut Pasteur Paris, and Michael Hiller from the Senckenberg Museum Frankfurt for +suggesting and then creating the SpliceAI Wildtype annotations.</p> <p>Thanks to Nils Wagner for helpful comments and suggestions for the AbSplice track.</p> <p>Thanks to the SpliceVarDB team for converting the data into our data formats.</p> <h2>References</h2> <p> Jaganathan K, Kyriazopoulou Panagiotopoulou S, McRae JF, Darbandi SF, Knowles D, Li YI, Kosmicki JA, Arbelaez J, Cui W, Schwartz GB <em>et al</em>. <a href="https://linkinghub.elsevier.com/retrieve/pii/S0092-8674(18)31629-5" target="_blank"> Predicting Splicing from Primary Sequence with Deep Learning</a>. <em>Cell</em>. 2019 Jan 24;176(3):535-548.e24. PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/30661751" target="_blank">30661751</a> </p>