2018891bde14d82a453f32ede847dbf2fdc51aa8
lrnassar
  Mon Oct 20 15:48:09 2025 -0700
Separating the hg38 encode cCREs into a new container which will have the new ENCODE4 data, I had to do it this way because mm10 also has this track, but that one is not moving to the new container. Refs #34923 #36529

diff --git src/hg/makeDb/trackDb/trackDb.cCREs.alpha.ra src/hg/makeDb/trackDb/trackDb.cCREs.alpha.ra
new file mode 100644
index 00000000000..6d21359546b
--- /dev/null
+++ src/hg/makeDb/trackDb/trackDb.cCREs.alpha.ra
@@ -0,0 +1,19 @@
+# ENCODE 3 tracks
+
+track encodeCcreCombined
+type bigBed 9 +
+shortLabel ENCODE cCREs
+longLabel ENCODE Candidate Cis-Regulatory Elements (cCREs) combined from all cell types
+bigDataUrl /gbdb/$D/encode3/ccre/encodeCcreCombined.bb
+bedNameLabel ENCODE Accession
+urlLabel cCRE details at ENCODE SCREEN:
+filterValues.ucscLabel prom|promoter-like signature (PLS/prom),enhP|proximal enhancer-like signature (pELS/enhP),enhD|distal enhancer-like signature (dELS/enhD),CTCF|CTCF only (CTCF/CTCF-only),K4m3|DNase-H3K4me3 (DNase-H3K4me3/k4m3)
+filterLabel.ucscLabel cCRE classification
+group regulation
+visibility dense
+priority 1
+darkerLabels on
+labelFields accessionLabel,ucscLabel,encodeLabel
+defaultLabelFields accessionLabel,ucscLabel
+skipFields encodeLabel,ucscLabel,accessionLabel,description
+mouseOver <b>Accession</b>: $name<br> <b>Classification</b>: $ccre<br>