Commits for markd

v489_base to v490_preview (2025-10-13 to 2025-10-20) v490

d0054a39067a773d5342af78a80d964835d47a60 Thu Oct 16 13:28:21 2025 -0700

• add bedToBigBed -fixScores to correct scores that are out-of-range or invalid
  • src/inc/basicBed.h - lines changed 12, context: html, text, full: html, text
  • src/lib/basicBed.c - lines changed 27, context: html, text, full: html, text
  • src/utils/bedToBigBed/bedToBigBed.c - lines changed 15, context: html, text, full: html, text
  • src/utils/bedToBigBed/tests/expected/fixScores.bed - lines changed 9, context: html, text, full: html, text
  • src/utils/bedToBigBed/tests/input/badScores.bed - lines changed 9, context: html, text, full: html, text
  • src/utils/bedToBigBed/tests/makefile - lines changed 8, context: html, text, full: html, text

5c04291d6636242cb62b6f770fdc93b23873f9d3 Thu Oct 16 13:29:03 2025 -0700

• fix blast alignment parsing to handle format change
  • src/lib/blastParse.c - lines changed 4, context: html, text, full: html, text

2864f251af636a178b0aab97692d09ccd4bab2ea Thu Oct 16 16:15:32 2025 -0700

• fixed typo in help message
  • src/utils/bedToBigBed/bedToBigBed.c - lines changed 1, context: html, text, full: html, text

0fd1efc259789856500a2725dc2f8d7e4ff2e1f3 Thu Oct 16 20:56:15 2025 -0700

• added link to ArrayExpress entry for CLS long-read experiments
  • src/hg/makeDb/trackDb/human/hg38/clsLongReadRna.html - lines changed 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/clsLongReadRna.html - lines changed 14, context: html, text, full: html, text

70e7951984073b44aa4c0a060e17fbdaed99b355 Fri Oct 17 20:03:27 2025 -0700

• fixed doc stray character
  • src/hg/makeDb/trackDb/mouse/mm10/clsLongReadRna.html - lines changed 1, context: html, text, full: html, text