File Changes for hiram

v491_preview2 to v491_base (2025-11-17 to 2025-11-24) v491

• src/hg/hgHubConnect/hgHubConnect.c
  • lines changed 8, context: html, text, full: html, text
    9fd202b891f2e2d5be9cfa807e5d5ba15e7fc02d Fri Nov 21 15:59:50 2025 -0800
    protect the hs1 assembly on the outlinks with db=hs1 instead of genome=hs1 refs #36540
• src/hg/makeDb/doc/bacteriaAsmHub/bacteria.orderList.tsv
  • lines changed 1, context: html, text, full: html, text
    4637fe065c495e4e12805521872e51dc45880fff Wed Nov 19 15:02:30 2025 -0800
    adding several per user request refs #29545
• src/hg/makeDb/doc/legacyAsmHub/legacy.orderList.tsv
  • lines changed 1, context: html, text, full: html, text
    83b077f17c6a2b4a297e48c035b64ac6ecc86b44 Wed Nov 19 14:48:53 2025 -0800
    NCBI assembly name change refs #29545
• src/hg/makeDb/doc/mammalsAsmHub/mammals.orderList.tsv
  • lines changed 2, context: html, text, full: html, text
    4637fe065c495e4e12805521872e51dc45880fff Wed Nov 19 15:02:30 2025 -0800
    adding several per user request refs #29545
• src/hg/makeDb/doc/viralAsmHub/viral.orderList.tsv
  • lines changed 1, context: html, text, full: html, text
    4637fe065c495e4e12805521872e51dc45880fff Wed Nov 19 15:02:30 2025 -0800
    adding several per user request refs #29545
• src/hg/ratStuff/mafAddIRows/mafAddIRows.c
  • lines changed 32, context: html, text, full: html, text
    b6f7fd1e76673d2fd96e46ede11a11f421e15675 Sat Nov 22 17:13:04 2025 -0800
    now correctly managing GenArk GCA and GCF assembly names refs #34370
• src/hg/ratStuff/mafSplit/mafSplit.c
  • lines changed 26, context: html, text, full: html, text
    c31d6f7174025d44270f64f086b06df10b4196a6 Sat Nov 22 17:14:37 2025 -0800
    now correctly managing GenArk GCA and GCF assembly names refs #34370
• src/hg/utils/otto/genArk/liftOverNew.sh
  • lines changed 85, context: html, text, full: html, text
    ccff28e568396045db4f31d9fa577412b017e837 Wed Nov 19 14:28:51 2025 -0800
    now getting the /gbdb/*/liftOver/ files on the RR push list refs #35575
• src/hg/utils/otto/genArk/whatIsNew.sh
  • lines changed 9, context: html, text, full: html, text
    ccff28e568396045db4f31d9fa577412b017e837 Wed Nov 19 14:28:51 2025 -0800
    now getting the /gbdb/*/liftOver/ files on the RR push list refs #35575
• src/hg/utils/twoBitMask/makefile
  • lines changed 3, context: html, text, full: html, text
    986f3f122a40cb28b2ac4cc6c51048784a7ea872 Sat Nov 22 15:39:03 2025 -0800
    add test for bigBed input refs #36672
• src/hg/utils/twoBitMask/tests/input/testMask1.bb
  • lines changed 0, context: html, text, full: html, text
    986f3f122a40cb28b2ac4cc6c51048784a7ea872 Sat Nov 22 15:39:03 2025 -0800
    add test for bigBed input refs #36672
• src/hg/utils/twoBitMask/twoBitMask.c
  • lines changed 30, context: html, text, full: html, text
    af3fb358fdeee7bf9080bdee719eb0cc1d4b4c72 Sat Nov 22 15:32:57 2025 -0800
    allow input to be a bigBed file refs #36672