d8bde2e6d8e0100c915d486f9c44beb06f638a18 max Thu Nov 20 22:07:13 2025 -0800 update to varfreqs docs page diff --git src/hg/makeDb/trackDb/human/varFreqs.html src/hg/makeDb/trackDb/human/varFreqs.html index dadf9f83ab0..45f7f1a4581 100644 --- src/hg/makeDb/trackDb/human/varFreqs.html +++ src/hg/makeDb/trackDb/human/varFreqs.html @@ -1,21 +1,27 @@
-This container track contains annotation tracks with individual level genotypes, usually phased, and tracks -where only the variant frequencies, aka allele frequencies, are shown. The tracks were collected from the following -projects. Only the projects 1000 Genomes (its own track), HGDP, SGDP, HGDP+1k and MXB provide individual-level genotypes. -All others provide only allele frequencies, their genotypes require signing a data access agreement. +This container shows results from projects +where the variant frequencies, aka allele frequencies, are publicly available. The tracks were collected from the +projects listed below. Projects that provide haplotype-phased genotypes/variants can be found +elsewhere: 1000 Genomes is a separate track, and the projects HGDP, SGDP, +HGDP+1k and MXB can be found in the "Phased Variants" track. +
+If you want us to add other projects, please contact us. We asked and were +unable to obtain variant frequencies from the following projects: NPM Singapore +(10k, Chinese/Indian/Malay, free, but requires login at NPM. +UK Biobank (request pending).
Available on hg19 and hg38: