62b1428915cc2c8b9acbf46a86c1248833257efe mspeir Mon Nov 17 18:50:32 2025 -0800 changing rest of genome-source references to github, refs #34485 diff --git src/hg/makeDb/trackDb/cpgIslandSuper.html src/hg/makeDb/trackDb/cpgIslandSuper.html index f139f5b72fc..2bcb295c282 100644 --- src/hg/makeDb/trackDb/cpgIslandSuper.html +++ src/hg/makeDb/trackDb/cpgIslandSuper.html @@ -70,31 +70,31 @@ <em>twoBitToFa -noMask</em> output for the <em>twoBitToFa</em> command. </p> <h2>Data access</h2> <p> CpG islands and its associated tables can be explored interactively using the <a href="../goldenPath/help/api.html" target="_blank">REST API</a>, the <a href="/cgi-bin/hgTables" target="_blank">Table Browser</a> or the <a href="/cgi-bin/hgIntegrator" target="_blank">Data Integrator</a>. All the tables can also be queried directly from our public MySQL servers, with more information available on our <a target="_blank" href="/goldenPath/help/mysql.html">help page</a> as well as on <a target="_blank" href="http://genome.ucsc.edu/blog/tag/mysql/">our blog</a>.</p> <p> The source for the <em>cpg_lh</em> program can be obtained from -<a href="https://genome-source.gi.ucsc.edu/gitlist/kent.git/tree/master/src/utils/cpgIslandExt/" target=_blank>src/utils/cpgIslandExt/</a>. +<a href="https://github.com/ucscGenomeBrowser/kent/tree/master/src/utils/cpgIslandExt/" target=_blank>src/utils/cpgIslandExt/</a>. The <em>cpg_lh</em> program binary can be obtained from: <a href="http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/cpg_lh" download="cpg_lh">http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/cpg_lh</a> (choose "save file") </p> <h2>Credits</h2> <p>This track was generated using a modification of a program developed by G. Miklem and L. Hillier (unpublished).</p> <h2>References</h2> <p> Gardiner-Garden M, Frommer M. <a href="https://www.sciencedirect.com/science/article/pii/0022283687906899" target="_blank"> CpG islands in vertebrate genomes</a>. <em>J Mol Biol</em>. 1987 Jul 20;196(2):261-82.