62b1428915cc2c8b9acbf46a86c1248833257efe mspeir Mon Nov 17 18:50:32 2025 -0800 changing rest of genome-source references to github, refs #34485 diff --git src/hg/utils/automation/genbank/README.txt src/hg/utils/automation/genbank/README.txt index 8b92b7fa2ca..a93819a0601 100644 --- src/hg/utils/automation/genbank/README.txt +++ src/hg/utils/automation/genbank/README.txt @@ -1,22 +1,22 @@ ############################################################################ UCSC procedure to mirror genbank/refseq assemblies and generate assembly hubs This README.txt file is from: -http://genome-source.soe.ucsc.edu/gitlist/kent.git/blob/master/src/hg/utils/automation/genbank/README.txt +http://github.com/ucscGenomeBrowser/kent/blob/master/src/hg/utils/automation/genbank/README.txt ############################################################################ # mirror genbank/refseq hierarchy There is a cron job running once a day M-F that runs an rsync command to fetch a select set of files from genbank/refseq. The script here is: cronUpdate.sh with one argument specifying either the refseq or genbank assembly hierarchy, e.g.: cronUpdate.sh refseq The accumulating hierarchy at UCSC is in: export outside="/hive/data/outside/ncbi/genomes/refseq" Or, if genbank assemblies: export outside="/hive/data/outside/ncbi/genomes/genbank"