62b1428915cc2c8b9acbf46a86c1248833257efe mspeir Mon Nov 17 18:50:32 2025 -0800 changing rest of genome-source references to github, refs #34485 diff --git src/product/scripts/kentSrcUpdate.sh src/product/scripts/kentSrcUpdate.sh index ccaea0501a7..91b7d54e5a2 100755 --- src/product/scripts/kentSrcUpdate.sh +++ src/product/scripts/kentSrcUpdate.sh @@ -43,31 +43,31 @@ umask 002 mkdir -p "${kentSrc}" # clean the source tree before updating it, this will lead # to a cleaner report from git pull if [ -d "${kentSrc}/src" ]; then cd "${kentSrc}/src" make clean > /dev/null 2> /dev/null rm -f tags daily.log utils.log blatSuite.log else # first time, needs to establish the source tree cd "${kentSrc}" cd .. rmdir kent - time git clone git://genome-source.soe.ucsc.edu/kent.git + time git clone https://github.com/ucscGenomeBrowser/kent.git cd kent git checkout -t -b beta origin/beta cd .. fi # not necessary, but this is where it is happening cd "${kentSrc}" testHere=`pwd` if [ "X${testHere}Y" != "X${kentSrc}Y" ]; then echo "ERROR: kentSrcUpdate.sh failed to chdir to ${kentSrc}" 1>&2 exit 255; fi echo "git update report summary is in email to ${LOGNAME}" 1>&2 /usr/bin/git pull 2>&1 | mail -s 'GIT update report kent' "${LOGNAME}"