7bcba9b8eeca07a85517921f653a565be81fef22
gperez2
Sun Nov 9 15:07:17 2025 -0800
Commenting out the pennantIcons, refs #36612
diff --git src/hg/makeDb/trackDb/human/trackDb.ra src/hg/makeDb/trackDb/human/trackDb.ra
index 157ac755e82..995c068498b 100644
--- src/hg/makeDb/trackDb/human/trackDb.ra
+++ src/hg/makeDb/trackDb/human/trackDb.ra
@@ -146,31 +146,31 @@
group phenDis
visibility hide
color 0,100,0
type bigBed 9 +
release alpha
mouseOverField trait
bigDataUrl /gbdb/$D/bbi/phegeni.bb
urls studyId=https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=$$ geneId1=https://www.ncbi.nlm.nih.gov/gene/?term=$$%5Buid%5D geneId2=https://www.ncbi.nlm.nih.gov/gene/?term=$$%5Buid%5D analysisId=https://www.ncbi.nlm.nih.gov/projects/SNP/gViewer/gView.cgi?aid=$$ catalogId=https://www.ebi.ac.uk/gwas/search?query=$$
track varsInPubs
shortLabel Variants in Papers
longLabel Genetic Variants mentioned in scientific publications
superTrack on
group phenDis
type bed 3
-pennantIcon Updated red ../goldenPath/newsarch.html#080125 "Updated Varaico Variants to release 2 and new Varaico Variants (suppl) track Nov. 06, 2025"
+#pennantIcon Updated red ../goldenPath/newsarch.html#080125 "Updated Varaico Variants to release 2 and new Varaico Variants (suppl) track Nov. 06, 2025"
track mastermind
shortLabel Mastermind Variants
longLabel Genomenon Mastermind Variants extracted from full text publications
visibility dense
type bigBed 9 +
urls url=$$
bigDataUrl /gbdb/$D/bbi/mastermind.bb
noScoreFilter on
exonNumbers off
mouseOver Variant: $name
Gene: $gene
Linkout: $_mouseOver
Article count 1: $mmcnt1
Article count 2: $mmcnt2
Article count 3: $mmcnt3
itemRgb on
filter.mmcnt1 0
filter.mmcnt2 0
filter.mmcnt3 0
@@ -231,47 +231,47 @@
html varsInPubs
track varaico
shortLabel Varaico Variants
longLabel Varaico Variants extracted from full text publications, titles, and abstracts
visibility dense
type bigBed 9 +
bigDataUrl /gbdb/$D/bbi/varaico.bb
noScoreFilter on
exonNumbers off
# itemRgb on
dataVersion release 2 (20251027)
parent varsInPubs pack
urls outlink="$$" selectedPmid="https://www.ncbi.nlm.nih.gov/pubmed/$$" rgene="https://www.ncbi.nlm.nih.gov/nuccore/$$"
mouseOver $hgncSymbol $variantOrigStrs in: $author ($journal, $year) - $title
Number of publications: $articlesCount
Variant Effect: $variantEffect
- pennantIcon Updated red ../goldenPath/newsarch.html#110625 "Nov. 06, 2025"
+ #pennantIcon Updated red ../goldenPath/newsarch.html#110625 "Nov. 06, 2025"
html varaico.html
track varaicoSuppl
shortLabel Varaico Variants (suppl)
longLabel Varaico Variants extracted from Supplementary Data
visibility dense
type bigBed 9 +
bigDataUrl /gbdb/$D/bbi/varaicoSuppl.bb
noScoreFilter on
exonNumbers off
# itemRgb on
dataVersion release 2 (20251027)
parent varsInPubs pack
urls outlink="$$" selectedPmid="https://www.ncbi.nlm.nih.gov/pubmed/$$" rgene="https://www.ncbi.nlm.nih.gov/nuccore/$$"
mouseOver $hgncSymbol $variantOrigStrs in: $author ($journal, $year) - $title
Number of publications: $articlesCount
Variant Effect: $variantEffect
- pennantIcon New red ../goldenPath/newsarch.html#110625 "Released Nov. 06, 2025"
+ #pennantIcon New red ../goldenPath/newsarch.html#110625 "Released Nov. 06, 2025"
html varaico.html
track caseControl
compositeTrack on
shortLabel Case Control
longLabel Case Control Consortium
group phenDis
visibility hide
type chromGraph
minMax 0,15
linesAt 5,10
track cccTrendPvalBd
parent caseControl
shortLabel CCC Bipolar Dis