902ddcd7fbb3d57866a542f85eecdaaf16f58684
gperez2
  Wed Nov 5 12:31:44 2025 -0800
Edits to the Varaico update, refs #36612

diff --git src/hg/makeDb/trackDb/human/trackDb.ra src/hg/makeDb/trackDb/human/trackDb.ra
index ef9876eba87..294ae967933 100644
--- src/hg/makeDb/trackDb/human/trackDb.ra
+++ src/hg/makeDb/trackDb/human/trackDb.ra
@@ -146,31 +146,31 @@
 group phenDis
 visibility hide
 color 0,100,0
 type bigBed 9 +
 release alpha
 mouseOverField trait
 bigDataUrl /gbdb/$D/bbi/phegeni.bb
 urls studyId=https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=$$ geneId1=https://www.ncbi.nlm.nih.gov/gene/?term=$$%5Buid%5D geneId2=https://www.ncbi.nlm.nih.gov/gene/?term=$$%5Buid%5D analysisId=https://www.ncbi.nlm.nih.gov/projects/SNP/gViewer/gView.cgi?aid=$$ catalogId=https://www.ebi.ac.uk/gwas/search?query=$$
 
 track varsInPubs
 shortLabel Variants in Papers
 longLabel Genetic Variants mentioned in scientific publications
 superTrack on
 group phenDis
 type bed 3
-pennantIcon Updated red ../goldenPath/newsarch.html#080125 "Added PubTator Variants Aug. 01, 2025"
+pennantIcon Updated red ../goldenPath/newsarch.html#080125 "Updated Varaico Variants to release 2 and new Varaico Variants (suppl) track Nov. 06, 2025"
 
         track mastermind
         shortLabel Mastermind Variants
         longLabel Genomenon Mastermind Variants extracted from full text publications
         visibility dense
         type bigBed 9 +
         urls url=$$
         bigDataUrl /gbdb/$D/bbi/mastermind.bb
         noScoreFilter on
         exonNumbers off
         mouseOver <b>Variant</b>: $name<br>  <b>Gene</b>: $gene<br> <b>Linkout</b>: <a href="$url" target="_blank">$_mouseOver</a><br> <b>Article count 1</b>: $mmcnt1<br> <b>Article count 2</b>: $mmcnt2<br> <b>Article count 3</b>: $mmcnt3
         itemRgb on
         filter.mmcnt1 0
         filter.mmcnt2 0
         filter.mmcnt3 0
@@ -231,47 +231,48 @@
         html varsInPubs
 
         track varaico
         shortLabel Varaico Variants
         longLabel Varaico Variants extracted from full text publications, titles, and abstracts
         visibility dense
         type bigBed 9 +
         bigDataUrl /gbdb/$D/bbi/varaico.bb
         noScoreFilter on
         exonNumbers off
         # itemRgb on
         dataVersion release 2 (20251027)
         parent varsInPubs pack
         urls outlink="$$" selectedPmid="https://www.ncbi.nlm.nih.gov/pubmed/$$" rgene="https://www.ncbi.nlm.nih.gov/nuccore/$$"
         mouseOver <b>$hgncSymbol $variantOrigStrs</b> in: $author ($journal, $year) - $title <br> <b>Number of publications:</b> $articlesCount <br> <b>Variant Effect:</b> $variantEffect
+        pennantIcon Updated red ../goldenPath/newsarch.html#110625 "Nov. 06, 2025"
         html varaico.html
 
         track varaicoSuppl
         shortLabel Varaico Variants (suppl)
         longLabel Varaico Variants extracted from Supplementary Data
         visibility dense
         type bigBed 9 +
         bigDataUrl /gbdb/$D/bbi/varaicoSuppl.bb
         noScoreFilter on
         exonNumbers off
         # itemRgb on
         dataVersion release 2 (20251027)
         parent varsInPubs pack
         urls outlink="$$" selectedPmid="https://www.ncbi.nlm.nih.gov/pubmed/$$" rgene="https://www.ncbi.nlm.nih.gov/nuccore/$$"
         mouseOver <b>$hgncSymbol $variantOrigStrs</b> in: $author ($journal, $year) - $title <br> <b>Number of publications:</b> $articlesCount <br> <b>Variant Effect:</b> $variantEffect
+        pennantIcon New red ../goldenPath/newsarch.html#110625 "Released Nov. 06, 2025"
         html varaico.html
-        release alpha
 
 track caseControl
 compositeTrack on
 shortLabel Case Control
 longLabel Case Control Consortium
 group phenDis
 visibility hide
 type chromGraph
 minMax 0,15
 linesAt 5,10
 
     track cccTrendPvalBd
     parent caseControl
     shortLabel CCC Bipolar Dis
     longLabel Case Control Consortium Bipolar Disorder Trend -log10 P-value