ef8aa7e210d822fc0f2e4cc423e52158bcec5ab9
gperez2
Tue Nov 4 16:24:05 2025 -0800
Removing testing tracks and updating dataVersion to release 2 (20251027), refs #36612
diff --git src/hg/makeDb/trackDb/human/trackDb.ra src/hg/makeDb/trackDb/human/trackDb.ra
index f7a91f4d167..ef9876eba87 100644
--- src/hg/makeDb/trackDb/human/trackDb.ra
+++ src/hg/makeDb/trackDb/human/trackDb.ra
@@ -227,77 +227,46 @@
parent varsInPubs pack
urls pubmedIds="https://www.ncbi.nlm.nih.gov/pubmed/$$"
mouseOver $name found in ${numPubmedIds} PubMed articles
pennantIcon New red ../goldenPath/newsarch.html#080125 "Released Aug. 01, 2025"
html varsInPubs
track varaico
shortLabel Varaico Variants
longLabel Varaico Variants extracted from full text publications, titles, and abstracts
visibility dense
type bigBed 9 +
bigDataUrl /gbdb/$D/bbi/varaico.bb
noScoreFilter on
exonNumbers off
# itemRgb on
- dataVersion release 1
+ dataVersion release 2 (20251027)
parent varsInPubs pack
urls outlink="$$" selectedPmid="https://www.ncbi.nlm.nih.gov/pubmed/$$" rgene="https://www.ncbi.nlm.nih.gov/nuccore/$$"
mouseOver $hgncSymbol $variantOrigStrs in: $author ($journal, $year) - $title
Number of publications: $articlesCount
Variant Effect: $variantEffect
html varaico.html
track varaicoSuppl
shortLabel Varaico Variants (suppl)
longLabel Varaico Variants extracted from Supplementary Data
visibility dense
type bigBed 9 +
bigDataUrl /gbdb/$D/bbi/varaicoSuppl.bb
noScoreFilter on
exonNumbers off
# itemRgb on
- dataVersion release 1
- parent varsInPubs pack
- urls outlink="$$" selectedPmid="https://www.ncbi.nlm.nih.gov/pubmed/$$" rgene="https://www.ncbi.nlm.nih.gov/nuccore/$$"
- mouseOver $hgncSymbol $variantOrigStrs in: $author ($journal, $year) - $title
Number of publications: $articlesCount
Variant Effect: $variantEffect
- html varaico.html
-
- track varaicoTest
- shortLabel Varaico Main Test
- longLabel Varaico Main Test
- visibility dense
- type bigBed 9 +
- bigDataUrl /hive/users/jbirgmei/amelie2/data/out/None/full/$D/normalized_variants.$D.bb
- noScoreFilter on
- exonNumbers off
- # itemRgb on
- dataVersion release 1
- parent varsInPubs pack
- urls outlink="$$" selectedPmid="https://www.ncbi.nlm.nih.gov/pubmed/$$" rgene="https://www.ncbi.nlm.nih.gov/nuccore/$$"
- mouseOver $hgncSymbol $variantOrigStrs in: $author ($journal, $year) - $title
Number of publications: $articlesCount
Variant Effect: $variantEffect
- html varaico.html
- release alpha
-
- track varaicoSupplTest
- shortLabel Varaico Suppl Test
- longLabel Varaico Suppl Test
- visibility dense
- type bigBed 9 +
- bigDataUrl /hive/users/jbirgmei/amelie2/data/out/None/full/$D/normalized_variants_supplements.$D.bb
- noScoreFilter on
- exonNumbers off
- # itemRgb on
- dataVersion release 1
+ dataVersion release 2 (20251027)
parent varsInPubs pack
urls outlink="$$" selectedPmid="https://www.ncbi.nlm.nih.gov/pubmed/$$" rgene="https://www.ncbi.nlm.nih.gov/nuccore/$$"
mouseOver $hgncSymbol $variantOrigStrs in: $author ($journal, $year) - $title
Number of publications: $articlesCount
Variant Effect: $variantEffect
html varaico.html
release alpha
track caseControl
compositeTrack on
shortLabel Case Control
longLabel Case Control Consortium
group phenDis
visibility hide
type chromGraph
minMax 0,15
linesAt 5,10