ef8aa7e210d822fc0f2e4cc423e52158bcec5ab9 gperez2 Tue Nov 4 16:24:05 2025 -0800 Removing testing tracks and updating dataVersion to release 2 (20251027), refs #36612 diff --git src/hg/makeDb/trackDb/human/trackDb.ra src/hg/makeDb/trackDb/human/trackDb.ra index f7a91f4d167..ef9876eba87 100644 --- src/hg/makeDb/trackDb/human/trackDb.ra +++ src/hg/makeDb/trackDb/human/trackDb.ra @@ -227,77 +227,46 @@ parent varsInPubs pack urls pubmedIds="https://www.ncbi.nlm.nih.gov/pubmed/$$" mouseOver $name found in ${numPubmedIds} PubMed articles pennantIcon New red ../goldenPath/newsarch.html#080125 "Released Aug. 01, 2025" html varsInPubs track varaico shortLabel Varaico Variants longLabel Varaico Variants extracted from full text publications, titles, and abstracts visibility dense type bigBed 9 + bigDataUrl /gbdb/$D/bbi/varaico.bb noScoreFilter on exonNumbers off # itemRgb on - dataVersion release 1 + dataVersion release 2 (20251027) parent varsInPubs pack urls outlink="$$" selectedPmid="https://www.ncbi.nlm.nih.gov/pubmed/$$" rgene="https://www.ncbi.nlm.nih.gov/nuccore/$$" mouseOver <b>$hgncSymbol $variantOrigStrs</b> in: $author ($journal, $year) - $title <br> <b>Number of publications:</b> $articlesCount <br> <b>Variant Effect:</b> $variantEffect html varaico.html track varaicoSuppl shortLabel Varaico Variants (suppl) longLabel Varaico Variants extracted from Supplementary Data visibility dense type bigBed 9 + bigDataUrl /gbdb/$D/bbi/varaicoSuppl.bb noScoreFilter on exonNumbers off # itemRgb on - dataVersion release 1 - parent varsInPubs pack - urls outlink="$$" selectedPmid="https://www.ncbi.nlm.nih.gov/pubmed/$$" rgene="https://www.ncbi.nlm.nih.gov/nuccore/$$" - mouseOver <b>$hgncSymbol $variantOrigStrs</b> in: $author ($journal, $year) - $title <br> <b>Number of publications:</b> $articlesCount <br> <b>Variant Effect:</b> $variantEffect - html varaico.html - - track varaicoTest - shortLabel Varaico Main Test - longLabel Varaico Main Test - visibility dense - type bigBed 9 + - bigDataUrl /hive/users/jbirgmei/amelie2/data/out/None/full/$D/normalized_variants.$D.bb - noScoreFilter on - exonNumbers off - # itemRgb on - dataVersion release 1 - parent varsInPubs pack - urls outlink="$$" selectedPmid="https://www.ncbi.nlm.nih.gov/pubmed/$$" rgene="https://www.ncbi.nlm.nih.gov/nuccore/$$" - mouseOver <b>$hgncSymbol $variantOrigStrs</b> in: $author ($journal, $year) - $title <br> <b>Number of publications:</b> $articlesCount <br> <b>Variant Effect:</b> $variantEffect - html varaico.html - release alpha - - track varaicoSupplTest - shortLabel Varaico Suppl Test - longLabel Varaico Suppl Test - visibility dense - type bigBed 9 + - bigDataUrl /hive/users/jbirgmei/amelie2/data/out/None/full/$D/normalized_variants_supplements.$D.bb - noScoreFilter on - exonNumbers off - # itemRgb on - dataVersion release 1 + dataVersion release 2 (20251027) parent varsInPubs pack urls outlink="$$" selectedPmid="https://www.ncbi.nlm.nih.gov/pubmed/$$" rgene="https://www.ncbi.nlm.nih.gov/nuccore/$$" mouseOver <b>$hgncSymbol $variantOrigStrs</b> in: $author ($journal, $year) - $title <br> <b>Number of publications:</b> $articlesCount <br> <b>Variant Effect:</b> $variantEffect html varaico.html release alpha track caseControl compositeTrack on shortLabel Case Control longLabel Case Control Consortium group phenDis visibility hide type chromGraph minMax 0,15 linesAt 5,10