902ddcd7fbb3d57866a542f85eecdaaf16f58684 gperez2 Wed Nov 5 12:31:44 2025 -0800 Edits to the Varaico update, refs #36612 diff --git src/hg/makeDb/trackDb/human/varaico.html src/hg/makeDb/trackDb/human/varaico.html index 891d977ed72..4fd6b2fc276 100755 --- src/hg/makeDb/trackDb/human/varaico.html +++ src/hg/makeDb/trackDb/human/varaico.html @@ -81,26 +81,30 @@ </table> </p> <H2>Data access</H2> <p> The raw data can be explored interactively with the <a href="../cgi-bin/hgTables">Table Browser</a> or the <a href="../cgi-bin/hgIntegrator">Data Integrator</a>. The data can be accessed from scripts through our <a href="https://api.genome.ucsc.edu">API</a>, the track name is "varaico". </p> <p> For automated download and analysis, the genome annotation is stored in a bigBed file that can be downloaded from <a href="http://hgdownload.soe.ucsc.edu/gbdb/$db/bbi/" target="_blank">our download server</a>. The file for this track is called <tt>varaico.bb</tt>. Individual -regions or the whole genome annotation can be obtained using our tool <tt>bigBedToBed</tt> +regions or the whole genome annotation can be obtained using our tool <tt>bigBedToBed</tt>, which can be compiled from the source code or downloaded as a precompiled binary for your system. </p> <p> +The previous Varaico Variants version is also available in our +<a href="https://hgdownload.soe.ucsc.edu/goldenPath/archive/$db/varaico/" +target="_blank">download archive</a>.</p> +<p> Instructions for downloading source code and binaries can be found <a href="http://hgdownload.soe.ucsc.edu/downloads.html#utilities_downloads">here</a>. The tool can also be used to obtain only features within a given range, e.g. <br><br> <tt>bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/bbi/varaico.bb -chrom=chr21 -start=0 -end=10000000 stdout</tt></p> </p>