e1868c9f1dae8212b13ee13fdc785436ee7b7ff1 gperez2 Mon Nov 10 09:11:01 2025 -0800 Removing bigMethyl.html, we added the bigMethyl description in bedMethyl.html, No RM diff --git src/hg/htdocs/goldenPath/help/bigMethyl.html src/hg/htdocs/goldenPath/help/bigMethyl.html deleted file mode 100755 index cd8cd4b6caa..00000000000 --- src/hg/htdocs/goldenPath/help/bigMethyl.html +++ /dev/null @@ -1,51 +0,0 @@ - - - - - - - -

BigMethyl Track Format

-

-The bigMethyl format allows display of methylation sites. - -

General Structure

-

-The bigMethyl format is line-oriented. BigMethyl data are preceded by a -track definition line, which adds a number of options for -controlling the default display of this track.

-

-Following the track definition line are the track data in 18 column BED format:

- -
chromA  chromStartA  chromEndA  dataValueA
-chromB  chromStartB  chromEndB  dataValueB
- -

Parameters for bigMethyl track definition lines

-

-All options are placed in a single line separated by spaces:

-
track type=bigMethyl name=track_label description=center_label
-
-

-Note: if you copy/paste the above example, you must remove the line breaks.

-

-The track type is REQUIRED, and must be bigMethyl:

-
type=bigMethyl
-

- -

Data Values

-

-BigMethyl track data values can be integer or real, positive or negative values. The -chromosome coordinates are zero-based, half-open. -This means that the first chromosome position is 0, and the last position in a chromosome -of length N would be N - 1. The positions listed in the input data must be in -numerical order, and only the specified positions will be graphed. bigMethyl format has eighteen -columns of data: 

chrom chromStart chromEnd dataValue

-

-

Example

-

-Note: -The above example is a custom track that includes a track type= line that is -specific for loading the data in the browser. This line will cause a raw bigMethyl data file to fail -validation by other tools, such as validateFiles, outside of the browser.

- -