9da709168196ca0e7755b1d915eb030ab1b5d797 hiram Wed Nov 5 14:08:10 2025 -0800 correctly specify 12g refs #36546 diff --git src/hg/utils/automation/doBlastzChainNet.pl src/hg/utils/automation/doBlastzChainNet.pl index 58eccf10a4d..11460ea3364 100755 --- src/hg/utils/automation/doBlastzChainNet.pl +++ src/hg/utils/automation/doBlastzChainNet.pl @@ -819,31 +819,31 @@ rm \$2 mv liftedChain/\${c}.lifted.chain \$2 _EOF_ ; } close($fh); &makePslPartsLst(); my $whatItDoes = "It sets up and performs a small cluster run to chain all alignments to each target sequence."; my $bossScript = new HgRemoteScript("$runDir/doChainRun.csh", $paraHub, $runDir, $whatItDoes, $DEF); # raise memory limit to 12g 2025-10-29 - my $paraRun = &HgAutomate::paraRun(12, 1); + my $paraRun = &HgAutomate::paraRun(12g, 1); my $gensub2 = &HgAutomate::gensub2(); $bossScript->add(<<_EOF_ chmod a+x chain.csh $gensub2 pslParts.lst single gsub jobList mkdir -p chain liftedChain $paraRun rmdir liftedChain _EOF_ ); $bossScript->execute(); } # sub doChainRun {} sub postProcessChains { # chainMergeSort etc.