28bfc5e8e4301c0955eac938490458282438cf49 max Tue Nov 4 07:28:44 2025 -0800 adding HGDP and alfa docs page to var freqs track diff --git src/hg/makeDb/trackDb/human/alfa.html src/hg/makeDb/trackDb/human/ALFA.html similarity index 94% rename from src/hg/makeDb/trackDb/human/alfa.html rename to src/hg/makeDb/trackDb/human/ALFA.html index d9815973572..80bea32f2a6 100644 --- src/hg/makeDb/trackDb/human/alfa.html +++ src/hg/makeDb/trackDb/human/ALFA.html @@ -1,18 +1,15 @@ - - -

Description

The NCBI ALlele Frequency Aggregator (ALFA) pipeline is developed to compute allele frequency for variants in dbGaP across approved un-restricted studies and to provide the data as open-access to the public through dbSNP. The goal of the ALFA project is to make frequency data from over 1M dbGaP subjects open-access in future releases to facilitate discoveries and interpretations of common and rare variants with biological impacts or causing diseases.

The R4 release of 408,709 subjects included allele counts and frequency for 15.5 million rs site including 959,966 ClinVar RS IDs. More information about ALFA can be found at https://www.ncbi.nlm.nih.gov/snp/docs/gsr/alfa/ and any questions about ALFA track data should be forwarded to <mailto:snp-admin@ncbi.nlm.nih.gov>.

Subtracks

This track contains data from 12 populations: