28bfc5e8e4301c0955eac938490458282438cf49 max Tue Nov 4 07:28:44 2025 -0800 adding HGDP and alfa docs page to var freqs track diff --git src/hg/makeDb/trackDb/human/alfa.html src/hg/makeDb/trackDb/human/ALFA.html similarity index 94% rename from src/hg/makeDb/trackDb/human/alfa.html rename to src/hg/makeDb/trackDb/human/ALFA.html index d9815973572..80bea32f2a6 100644 --- src/hg/makeDb/trackDb/human/alfa.html +++ src/hg/makeDb/trackDb/human/ALFA.html @@ -1,18 +1,15 @@ -<html><head> -<meta http-equiv="content-type" content="text/html; charset=UTF-8"></head> - <body> <p><span style="font-size: 12pt;"><strong>Description</strong> </span></p> <p>The NCBI <strong>AL</strong>lele <strong>F</strong>requency <strong>A</strong>ggregator (<a href="https://www.ncbi.nlm.nih.gov/snp/docs/gsr/alfa/">ALFA</a>) pipeline is developed to compute allele frequency for variants in dbGaP across approved un-restricted studies and to provide the data as open-access to the public through dbSNP. The goal of the ALFA project is to make frequency data from over 1M dbGaP subjects open-access in future releases to facilitate discoveries and interpretations of common and rare variants with biological impacts or causing diseases.</p> <p>The R4 release of 408,709 subjects included allele counts and frequency for 15.5 million rs site including 959,966 ClinVar RS IDs. More information about ALFA can be found at https://www.ncbi.nlm.nih.gov/snp/docs/gsr/alfa/ and any questions about ALFA track data should be forwarded to <mailto:snp-admin@ncbi.nlm.nih.gov>.</p> <p><span style="font-size: 12pt;"><strong>Subtracks</strong></span></p> <p>This track contains data from 12 populations:</p>