1eb778792659124aa071876e2c5541bc8e3d6b3d max Tue Nov 4 01:54:21 2025 -0800 adding a link to more updated ancient dna tracks, refs #36592 diff --git src/hg/makeDb/trackDb/human/alfa.html src/hg/makeDb/trackDb/human/alfa.html new file mode 100644 index 00000000000..d9815973572 --- /dev/null +++ src/hg/makeDb/trackDb/human/alfa.html @@ -0,0 +1,75 @@ + + + +

Description

+

The NCBI ALlele Frequency Aggregator (ALFA) + pipeline is developed to compute allele frequency for variants in dbGaP + across approved un-restricted studies and to provide the data as +open-access to the public through dbSNP. The goal of the ALFA project is + to make frequency data from over 1M dbGaP subjects open-access in +future releases to facilitate discoveries and interpretations of common +and rare variants with biological impacts or causing diseases.

+

The R4 release of 408,709 subjects included allele +counts and frequency for 15.5 million rs site including 959,966 ClinVar RS IDs. More information about ALFA can +be found at https://www.ncbi.nlm.nih.gov/snp/docs/gsr/alfa/ and any +questions about ALFA track data should be forwarded to +<mailto:snp-admin@ncbi.nlm.nih.gov>.

+

Subtracks

+

This track contains data from 12 populations:

+

* ALFA data for African population

+

* ALFA data for African American population

+

* ALFA data for African Others population

+

* ALFA data for Asian population

+

* ALFA data for East Asian population

+

* ALFA data for European population

+

* ALFA data for Global population

+

* ALFA data for Latin American 1 population

+

* ALFA data for Latin American 2 population

+

* ALFA data for Other population

+

* ALFA data for Other Asian population

+

* ALFA data for South Asian population

+

 

+

Display Conventions and Configuration

+

Labels

+

The variant label is the dbSNP reference SNP ID (rsid).

+

Mouseover

+

The mouseover (displayed when the mouse is hovered over a variant) shows the following:

+ +

 

+

Detail Page

+

The detail page contains the following:

+ +

  

+

Variant Colors

+

The colors indicate the alternate allele frequencies.

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