1eb778792659124aa071876e2c5541bc8e3d6b3d max Tue Nov 4 01:54:21 2025 -0800 adding a link to more updated ancient dna tracks, refs #36592 diff --git src/hg/makeDb/trackDb/human/alfa.html src/hg/makeDb/trackDb/human/alfa.html new file mode 100644 index 00000000000..d9815973572 --- /dev/null +++ src/hg/makeDb/trackDb/human/alfa.html @@ -0,0 +1,75 @@ +
+ + +Description
+The NCBI ALlele Frequency Aggregator (ALFA) + pipeline is developed to compute allele frequency for variants in dbGaP + across approved un-restricted studies and to provide the data as +open-access to the public through dbSNP. The goal of the ALFA project is + to make frequency data from over 1M dbGaP subjects open-access in +future releases to facilitate discoveries and interpretations of common +and rare variants with biological impacts or causing diseases.
+The R4 release of 408,709 subjects included allele +counts and frequency for 15.5 million rs site including 959,966 ClinVar RS IDs. More information about ALFA can +be found at https://www.ncbi.nlm.nih.gov/snp/docs/gsr/alfa/ and any +questions about ALFA track data should be forwarded to +<mailto:snp-admin@ncbi.nlm.nih.gov>.
+Subtracks
+This track contains data from 12 populations:
+* ALFA data for African population
+* ALFA data for African American population
+* ALFA data for African Others population
+* ALFA data for Asian population
+* ALFA data for East Asian population
+* ALFA data for European population
+* ALFA data for Global population
+* ALFA data for Latin American 1 population
+* ALFA data for Latin American 2 population
+* ALFA data for Other population
+* ALFA data for Other Asian population
+* ALFA data for South Asian population
+The variant label is the dbSNP reference SNP ID (rsid).
+The mouseover (displayed when the mouse is hovered over a variant) shows the following:
+The detail page contains the following:
++
The colors indicate the alternate allele frequencies.
+