1eb778792659124aa071876e2c5541bc8e3d6b3d
max
  Tue Nov 4 01:54:21 2025 -0800
adding a link to more updated ancient dna tracks, refs #36592

diff --git src/hg/makeDb/trackDb/human/varFreqs.ra src/hg/makeDb/trackDb/human/varFreqs.ra
index e56976b1169..56811e86168 100644
--- src/hg/makeDb/trackDb/human/varFreqs.ra
+++ src/hg/makeDb/trackDb/human/varFreqs.ra
@@ -27,40 +27,142 @@
         type vcfTabix
         dataVersion May 2023 (v1.2.0)
 
         track me
         shortLabel Regeneron Million Exomes
         longLabel Variant Frequencies: Regeneron One Million Exomes (ME) Project
         tableBrowser off
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/mcps/mcps.freq.vcf.gz
         visibility pack
         type vcfTabix
         hapClusterEnabled true
         dataVersion 10/04/2023, v1.1.3
 
         track topmed
-        shortLabel NHLBI TOPMED V10
-        longLabel Variant Frequencies: NHLBI TOPMED V10
+        shortLabel NHLBI TOPMED 10
+        longLabel Variant Frequencies: NHLBI TOPMED
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/topmed/topmed10.vcf.gz
         dataVersion Freeze 10
         visibility pack
 
         track gasp
         shortLabel GenomeAsia Pilot Subs
         longLabel Variant Frequencies: GenomeAsia Pilot Substitutions
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/ga100k/ga100k.subst.vcf.gz
         visibility pack
         #dataVersion GAsP Pilot: 1,739 individuals
 
-        track gaspIndels
-        shortLabel GenomeAsia Pilot Indels
-        longLabel Variant Frequencies: GenomeAsia Pilot Indels
-        type vcfTabix
-        parent varFreqs on
-        bigDataUrl /gbdb/$D/varFreqs/ga100k/All.indels.annot.cont_withmaf.vcf.gz
+        track ALFA
+        compositeTrack on
+        parent varFreqs
         visibility pack
-        #dataVersion GAsP Pilot: 1,739 individuals
+        itemRgb on
+        type bigBed 9 + .
+        shortLabel NCBI ALFA 
+        longLabel NCBI ALFA: Allele Frequency Aggregator from dbGap submissions
+        mouseOverField frequency
+        html ALFA.html
+        filter.score 10
+        #filterByRange.score on
+        #filterLimits.score 400:500
+        #filterValues.name rs1424773263,rs2531320
+
+             track ALFA_GLB
+             parent ALFA on
+             shortLabel NCBI ALFA: Global
+             bigDataUrl /gbdb/hg38/varFreqs/alfa/ALFA_GLB.bb
+             type bigBed 9 + .
+             url https://www.ncbi.nlm.nih.gov/snp/$$#frequency_tab
+             urlLabel NCBI Variation Page
+
+             track ALFA_EUR
+             parent ALFA on
+             shortLabel NCBI ALFA: European
+             bigDataUrl /gbdb/hg38/varFreqs/alfa/ALFA_EUR.bb
+             type bigBed 9 + .
+             url https://www.ncbi.nlm.nih.gov/snp/$$#frequency_tab
+             urlLabel NCBI Variation Page
+
+             track ALFA_AFA
+             parent ALFA on
+             shortLabel NCBI ALFA: African American
+             bigDataUrl /gbdb/hg38/varFreqs/alfa/ALFA_AFA.bb
+             type bigBed 9 + .
+             url https://www.ncbi.nlm.nih.gov/snp/$$#frequency_tab
+             urlLabel NCBI Variation Page
+
+             track ALFA_AFO
+             parent ALFA on
+             shortLabel NCBI ALFA: African Others
+             bigDataUrl /gbdb/hg38/varFreqs/alfa/ALFA_AFO.bb
+             type bigBed 9 + .
+             url https://www.ncbi.nlm.nih.gov/snp/$$#frequency_tab
+             urlLabel NCBI Variation Page
+
+             track ALFA_AFR
+             parent ALFA on
+             shortLabel NCBI ALFA: African
+             bigDataUrl /gbdb/hg38/varFreqs/alfa/ALFA_AFR.bb
+             type bigBed 9 + .
+             url https://www.ncbi.nlm.nih.gov/snp/$$#frequency_tab
+             urlLabel NCBI Variation Page
+
+             track ALFA_EAS
+             parent ALFA on
+             shortLabel NCBI ALFA: East Asian
+             bigDataUrl /gbdb/hg38/varFreqs/alfa/ALFA_EAS.bb
+             type bigBed 9 + .
+             url https://www.ncbi.nlm.nih.gov/snp/$$#frequency_tab
+             urlLabel NCBI Variation Page
+
+             track ALFA_SAS
+             parent ALFA on
+             shortLabel NCBI ALFA: South Asian
+             bigDataUrl /gbdb/hg38/varFreqs/alfa/ALFA_SAS.bb
+             type bigBed 9 + .
+             url https://www.ncbi.nlm.nih.gov/snp/$$#frequency_tab
+             urlLabel NCBI Variation Page
+
+             track ALFA_OAS
+             parent ALFA on
+             shortLabel NCBI ALFA: Other Asian
+             bigDataUrl /gbdb/hg38/varFreqs/alfa/ALFA_OAS.bb
+             type bigBed 9 + .
+             url https://www.ncbi.nlm.nih.gov/snp/$$#frequency_tab
+             urlLabel NCBI Variation Page
+
+             track ALFA_ASN
+             parent ALFA on
+             shortLabel NCBI ALFA: Asian
+             bigDataUrl /gbdb/hg38/varFreqs/alfa/ALFA_ASN.bb
+             type bigBed 9 + .
+             url https://www.ncbi.nlm.nih.gov/snp/$$#frequency_tab
+             urlLabel NCBI Variation Page
+
+             track ALFA_LAC
+             parent ALFA on
+             shortLabel NCBI ALFA: Latin American 1
+             bigDataUrl /gbdb/hg38/varFreqs/alfa/ALFA_LAC.bb
+             type bigBed 9 + .
+             url https://www.ncbi.nlm.nih.gov/snp/$$#frequency_tab
+             urlLabel NCBI Variation Page
+
+             track ALFA_LEN
+             parent ALFA on
+             shortLabel NCBI ALFA: Latin American 2
+             bigDataUrl /gbdb/hg38/varFreqs/alfa/ALFA_LEN.bb
+             type bigBed 9 + .
+             url https://www.ncbi.nlm.nih.gov/snp/$$#frequency_tab
+             urlLabel NCBI Variation Page
+
+             track ALFA_OTR
+             parent ALFA on
+             shortLabel NCBI ALFA: Other
+             bigDataUrl /gbdb/hg38/varFreqs/alfa/ALFA_OTR.bb
+             type bigBed 9 + .
+             url https://www.ncbi.nlm.nih.gov/snp/$$#frequency_tab
+             urlLabel NCBI Variation Page