c3c037cd89b6095049807b367371fc559a07ee95 max Mon Nov 3 17:43:57 2025 -0800 docs update for var freqs track diff --git src/hg/makeDb/trackDb/human/varFreqs.ra src/hg/makeDb/trackDb/human/varFreqs.ra index 7c17fd9fb1f..50a61169cf9 100644 --- src/hg/makeDb/trackDb/human/varFreqs.ra +++ src/hg/makeDb/trackDb/human/varFreqs.ra @@ -13,37 +13,54 @@ parent varFreqs on bigDataUrl /gbdb/$D/varFreqs/mexbb/MXBv2.vcf.gz visibility pack type vcfTabix hapClusterEnabled true dataVersion Nov 2025 track mcps shortLabel Mexico City Prospective Study longLabel Mexico City Prospective Study (MCPS) tableBrowser off parent varFreqs on bigDataUrl /gbdb/$D/varFreqs/mcps/mcps.freq.vcf.gz visibility pack type vcfTabix - hapClusterEnabled true dataVersion May 2023 (v1.2.0) track me - shortLabel Million Exomes + shortLabel Regeneron Million Exomes longLabel Regeneron One Million Exomes (ME) Project tableBrowser off parent varFreqs on bigDataUrl /gbdb/$D/varFreqs/mcps/mcps.freq.vcf.gz visibility pack type vcfTabix hapClusterEnabled true dataVersion 10/04/2023, v1.1.3 track topmed shortLabel NHLBI TOPMED V10 longLabel NHLBI TOPMED V10 type vcfTabix parent varFreqs on bigDataUrl /gbdb/$D/varFreqs/topmed10.vcf.gz dataVersion Freeze 10 visibility pack + + track gasp + shortLabel GenomeAsia Pilot Subs + longLabel GenomeAsia Pilot Substitutions + type vcfTabix + parent varFreqs on + bigDataUrl /gbdb/$D/varFreqs/ga100k/ga100k.subst.vcf.gz + visibility pack + #dataVersion GAsP Pilot: 1,739 individuals + + track gaspIndels + shortLabel GenomeAsia Pilot Indels + longLabel GenomeAsia Pilot Indels + type vcfTabix + parent varFreqs on + bigDataUrl /gbdb/$D/varFreqs/ga100k/All.indels.annot.cont_withmaf.vcf.gz + visibility pack + #dataVersion GAsP Pilot: 1,739 individuals